View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_64 (Length: 228)
Name: NF9055_low_64
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_64 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 31610562 - 31610352
Alignment:
| Q |
13 |
cattttagaatttaggttgaatatagcaaaatcgatttataatatgaaaaacttttaccacttatgaacataatattaactattaagtcatgtctaatgt |
112 |
Q |
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||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
31610562 |
cattttagaatttaggttgaatataacaaaattgacttataatgtgaaaaacttttaccacttatgaacata-tattaactattaa--catgtctaatgt |
31610466 |
T |
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| Q |
113 |
aaaattctcaacacaatttatagaggtatgtggcactctataaaagcctaagcaagggatatatggtttgttaatactatggctaagtggagatgaagcc |
212 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31610465 |
aaaattctcaacacaatttatagaggtatgcggcagtctataaaagcctaagcaaggg--atatggtttgttaatactatggctaagtggagatgaagcc |
31610368 |
T |
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| Q |
213 |
tcccatatcataatca |
228 |
Q |
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|||||||||||||||| |
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| T |
31610367 |
tcccatatcataatca |
31610352 |
T |
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