View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_71 (Length: 204)
Name: NF9055_low_71
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 183
Target Start/End: Original strand, 1703116 - 1703272
Alignment:
| Q |
27 |
ctagattacacacaaacatttagccctgttttcaagccaacaacgataagactagttctttctttagcactgcaacataattggccactccgtcaactag |
126 |
Q |
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| T |
1703116 |
ctagattacacacaaacattcagccctgttgtcaagccaacaacgataagactagttctttctttagcactgcaacataattggccactccgtcaactag |
1703215 |
T |
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| Q |
127 |
atgtcaataatgcatttctccatggctccttgagtgaagaggtttatatgcaacaac |
183 |
Q |
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| T |
1703216 |
atgtcaataatgcatttctccatggcttcttgagtgaagaggtttatatgcaacaac |
1703272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 27 - 183
Target Start/End: Complemental strand, 20625026 - 20624870
Alignment:
| Q |
27 |
ctagattacacacaaacatttagccctgttttcaagccaacaacgataagactagttctttctttagcactgcaacataattggccactccgtcaactag |
126 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20625026 |
ctagattacacacaaacattcagccctgttgtcaagccaacaacgataagactagttctttctttagccctgcaacataattggccactccgtcaactag |
20624927 |
T |
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| Q |
127 |
atgtcaataatgcatttctccatggctccttgagtgaagaggtttatatgcaacaac |
183 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20624926 |
atgtcaataatgcatttctccatggcttcttgagtgaagaggtttatatgcaacaac |
20624870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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