View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_9 (Length: 579)
Name: NF9055_low_9
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Complemental strand, 5051619 - 5051071
Alignment:
| Q |
18 |
agatcatgattaagttagaagagattcatactattttatctaagcgctcgataaccctttatcattaagctaaaaaataattaacaagtgcaataattct |
117 |
Q |
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| T |
5051619 |
agatcatgattaagttagaagagattcatactattttatctaagcgctcgataaccctttatcattaagctaaaaaataattaacaagtgcaataattct |
5051520 |
T |
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| Q |
118 |
ataaaatcattctatcatcgagtgtttatcattttttaactcatgctttcataggacgaatccacgcatactaaatt--------------atgatttca |
203 |
Q |
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| T |
5051519 |
ataaaatcattctatcatcgagtgtttatcattttttaactcgtgctttcataggacgaatccacgcatactaaatttggggctgcttattatgatttca |
5051420 |
T |
|
| Q |
204 |
ctaacttgatcactgattattagtaactaattgtgatctattaagtatttccgttaagagttaattaagtgaaa--gtagttgtcgaaataaaataaagc |
301 |
Q |
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| T |
5051419 |
ctaacttgatcactgattgttagtaactaattgtgatctattaagtatttccgttaagagttaattaagtgaaaaagtagttggcgaaataaaataaagc |
5051320 |
T |
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| Q |
302 |
ttccaatatgatgttggtattcactttttgtttttcaattcgaaatgataagtttggcagagttaatcttgtttggtacatgatcaaacttatagtgttt |
401 |
Q |
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| T |
5051319 |
ttccaatatgatgttggtattcactttttgtttttgaattcgaaatgataagtttggcagagttaatcttgtttggtacatgatcaaacttatagtgttt |
5051220 |
T |
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| Q |
402 |
agacattcacttataagaacaaattttttaataattaataacaatttattctactttttgttgatgttgatgtttaaaacgttcggtcttatttttcata |
501 |
Q |
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| T |
5051219 |
agacattcacttataagaac-----------caattaataacaatttattctactttttgttgatgttgatgtttaaaaggttcggtcttatttttcata |
5051131 |
T |
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| Q |
502 |
atggtcgatgtttttcataattgctaggaaattaaagaagcagccaattgttgttcgttc |
561 |
Q |
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| T |
5051130 |
atggtcgatgtttttcataattgctaggaaattaaagaagcagcctattgttgttcgttc |
5051071 |
T |
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