View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_high_12 (Length: 362)
Name: NF9056_high_12
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 20153529 - 20153876
Alignment:
| Q |
1 |
atttggaaacgtaactgcagaacnnnnnnnccgaactattcctattcctgttcctattcccaccctttttagcatacaatccgccacactcaatcaccgc |
100 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20153529 |
atttggaaacgtgactgcagaacaaaaaaaccgaactattcctattcctattcctattcccaccctttttagcatacaatccgccacactcaatcaccgc |
20153628 |
T |
|
| Q |
101 |
ccaattccattaaccaactaaactttcctccttacgtctgcagtcaagaagtgccagcaaacaaaccaccaaccaacccaacacccgccgttacctccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20153629 |
ccaattccattaaccaactaaactttcctccttacgtctgcagtcaagaagtgccagcaaacaaaccaccaaccaacccaacacccgccgttacctccat |
20153728 |
T |
|
| Q |
201 |
cggccgctgcacgccacctctcttaacgtttttgatatcgaca-ccccccttctctttcgcggtttcgtaccgaattcgatactttcaaacgcgccattt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20153729 |
cggccgctgcacgccacctctcttaacgtttttgatatcgacacccccccttctctttcgcggtttcgtaccgaattcgatactttcaaacgcgccattt |
20153828 |
T |
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| Q |
300 |
ctattatattctattggattggatctcggaaagtgatatatacatttt |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20153829 |
ctattatattctattggattggatctcggaaagtgatatatacatttt |
20153876 |
T |
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