View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9056_high_16 (Length: 287)

Name: NF9056_high_16
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9056_high_16
NF9056_high_16
[»] chr7 (4 HSPs)
chr7 (20-277)||(36348911-36349175)
chr7 (161-277)||(36360175-36360288)
chr7 (20-76)||(36360452-36360508)
chr7 (92-121)||(26253172-26253201)
[»] chr2 (3 HSPs)
chr2 (93-125)||(13027830-13027862)
chr2 (91-124)||(25084200-25084233)
chr2 (92-120)||(14958692-14958720)
[»] chr4 (2 HSPs)
chr4 (92-131)||(33975331-33975370)
chr4 (92-124)||(39767019-39767051)
[»] chr1 (2 HSPs)
chr1 (33-80)||(21186489-21186536)
chr1 (92-124)||(46917274-46917306)
[»] chr8 (1 HSPs)
chr8 (92-124)||(42309905-42309937)
[»] chr6 (1 HSPs)
chr6 (92-124)||(18153709-18153741)
[»] chr3 (3 HSPs)
chr3 (92-132)||(20915875-20915915)
chr3 (92-132)||(20924837-20924877)
chr3 (92-120)||(35317635-35317663)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 277
Target Start/End: Complemental strand, 36349175 - 36348911
Alignment:
Q  20 taatgtcagtgattatggagctaaaggggatggtaaaactgatgacacgcaggtatatataacacactcatcatttatagggaccaaaaacatatttaat 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  36349175 taatgtcagtgattatggagctaaaggggatggtaaaactgatgacacacaggtatatataatacactcatcatttatagagaccaaaaacatatttaat 36349076  T
Q  120 tcaaatcataatatactcatttgttcccatgcgggataca----caatattcaggcattcgagaagacttgggaagcagtatgttcttc---aggagggg 212  Q
    |||||||||||||||||||| |||||||||||||||||||     ||||||||||||||||||||| ||||||||||||||||||||||   ||||||||    
T  36349075 tcaaatcataatatactcatctgttcccatgcgggatacataattaatattcaggcattcgagaaggcttgggaagcagtatgttcttcaggaggagggg 36348976  T
Q  213 aagcagtttttgttgcacctcaagataatatttatctactcaaaccaatcagattctctgctcct 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36348975 aagcagtttttgttgcacctcaagataatatttatctactcaaaccaatcagattctctggtcct 36348911  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 36360288 - 36360175
Alignment:
Q  161 aatattcaggcattcgagaagacttgggaagcagtatgttcttcaggaggggaagcagtttttgttgcacctcaagataatatttatctactcaaaccaa 260  Q
    ||||||||||||||| ||||| ||||||||| ||||||||| |||||   | || ||||||| || |||||||||||| ||| |||||||||||||||||    
T  36360288 aatattcaggcattcaagaaggcttgggaagtagtatgttcgtcagg---gcaatcagttttagtggcacctcaagattataattatctactcaaaccaa 36360192  T
Q  261 tcagattctctgctcct 277  Q
    |||||||||||| ||||    
T  36360191 tcagattctctggtcct 36360175  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 36360508 - 36360452
Alignment:
Q  20 taatgtcagtgattatggagctaaaggggatggtaaaactgatgacacgcaggtata 76  Q
    |||||| || |||||||||||||||||||||||| | || |||||||| ||||||||    
T  36360508 taatgttagagattatggagctaaaggggatggtcatacggatgacacacaggtata 36360452  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 121
Target Start/End: Complemental strand, 26253201 - 26253172
Alignment:
Q  92 atttatagggaccaaaaacatatttaattc 121  Q
    ||||||||||||||||||||||||||||||    
T  26253201 atttatagggaccaaaaacatatttaattc 26253172  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 13027830 - 13027862
Alignment:
Q  93 tttatagggaccaaaaacatatttaattcaaat 125  Q
    |||||||||||||||||||||||||||||||||    
T  13027830 tttatagggaccaaaaacatatttaattcaaat 13027862  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 25084200 - 25084233
Alignment:
Q  91 catttatagggaccaaaaacatatttaattcaaa 124  Q
    |||||||||||||||||||||||||||| |||||    
T  25084200 catttatagggaccaaaaacatatttaactcaaa 25084233  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 14958692 - 14958720
Alignment:
Q  92 atttatagggaccaaaaacatatttaatt 120  Q
    |||||||||||||||||||||||||||||    
T  14958692 atttatagggaccaaaaacatatttaatt 14958720  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 33975331 - 33975370
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaatcataat 131  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  33975331 atttatagggaccaaaaacatatttaacccaaatcataat 33975370  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 39767019 - 39767051
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaa 124  Q
    ||||||||||||||||||||||||||| |||||    
T  39767019 atttatagggaccaaaaacatatttaactcaaa 39767051  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 21186536 - 21186489
Alignment:
Q  33 tatggagctaaaggggatggtaaaactgatgacacgcaggtatatata 80  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||||||    
T  21186536 tatggagctcaaggagatggtaaaactgatgacacaaaggtatatata 21186489  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 46917306 - 46917274
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaa 124  Q
    ||||||||||||||||||||||||||| |||||    
T  46917306 atttatagggaccaaaaacatatttaactcaaa 46917274  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 42309905 - 42309937
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaa 124  Q
    |||||||||||||||||||||||||||| ||||    
T  42309905 atttatagggaccaaaaacatatttaatccaaa 42309937  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 18153741 - 18153709
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaa 124  Q
    ||||||||||||||||||||||||||| |||||    
T  18153741 atttatagggaccaaaaacatatttaactcaaa 18153709  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 20915875 - 20915915
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaatcataata 132  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  20915875 atttatagggaccaaaaacatatttaacccaaataataata 20915915  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 20924837 - 20924877
Alignment:
Q  92 atttatagggaccaaaaacatatttaattcaaatcataata 132  Q
    |||||||||||||||||||||||||||  ||||| ||||||    
T  20924837 atttatagggaccaaaaacatatttaacccaaataataata 20924877  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 35317635 - 35317663
Alignment:
Q  92 atttatagggaccaaaaacatatttaatt 120  Q
    |||||||||||||||||||||||||||||    
T  35317635 atttatagggaccaaaaacatatttaatt 35317663  T

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