View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_high_2 (Length: 584)
Name: NF9056_high_2
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 34820740 - 34821307
Alignment:
| Q |
1 |
tcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820740 |
tcagcttcatctaatttgtcgtctacgagctgatggttaacttcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
34820839 |
T |
|
| Q |
101 |
caaaactactattatttccagcttcatctaacttgtcgtttgttataggcaacttgtttgaagaaattatgttcagcatttgaagaatatcattgggccg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820840 |
caaaactactattatttccagcttcatctaacttgtcgtttgttataggcaacttgtttgaagaaattatgttcagcatttgaagaatatcattgggccg |
34820939 |
T |
|
| Q |
201 |
tcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctgttcaaca |
300 |
Q |
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| T |
34820940 |
tcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatcggtcttcatctgttcaaca |
34821039 |
T |
|
| Q |
301 |
aatagtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagacttgatat |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34821040 |
aatggtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccctaaatgcaagacttgatat |
34821139 |
T |
|
| Q |
401 |
caattaattgtgtaaattatttccacaaacatcattagagatcattgcttaacatttactatggtctgttaggtacgtaatggattaactcataactaga |
500 |
Q |
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| T |
34821140 |
caattaattgtgtaaattatttccacaaacatcattagagatcattgcttaacatttactatggtctgttaggtacgtaatggattaactcataactaga |
34821239 |
T |
|
| Q |
501 |
gacaatacttatttgatttcataattatcaacaatcatggactttgtgatattaatctagctttttgg |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34821240 |
gacaatacttatttgatttcataattatcaacaatcatggactttgtgatattaatctagctttttgg |
34821307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 34820625 - 34820761
Alignment:
| Q |
3 |
agcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaaca |
102 |
Q |
| |
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|||||||||||| ||||| ||||| || ||||||||||||||| ||||||||||||||| || | |||||| |||||||||||||||||||||||||||| |
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| T |
34820625 |
agcttcatctaagttgtcatctacaagctgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaaca |
34820724 |
T |
|
| Q |
103 |
aaactactattatttccagcttcatctaacttgtcgt |
139 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| |
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| T |
34820725 |
aaactactattattttcagcttcatctaatttgtcgt |
34820761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34820272 - 34820400
Alignment:
| Q |
1 |
tcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
100 |
Q |
| |
|
||||||| ||| ||||||||||| |||| ||||||| |||| |||||||||||||||||| || | |||||| |||||||||||||||||||||||||| |
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| T |
34820272 |
tcagctttgtctgatttgtcgtctgcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaa |
34820371 |
T |
|
| Q |
101 |
caaaactactattatttccagcttcatct |
129 |
Q |
| |
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|||||| |||||||||| ||||||||||| |
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| T |
34820372 |
caaaacaactattattttcagcttcatct |
34820400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 34820508 - 34820642
Alignment:
| Q |
3 |
agcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaaca |
102 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||| || ||||||||||||| |||||| | | |||| |||||| |||| |||||||| ||||||||| |
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| T |
34820508 |
agcttcatctgatttgtcgtctgcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaaca |
34820607 |
T |
|
| Q |
103 |
aaactactattatttccagcttcatctaacttgtc |
137 |
Q |
| |
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||||||||||||||| |||||||||||| ||||| |
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| T |
34820608 |
aaactactattatttttagcttcatctaagttgtc |
34820642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 34820389 - 34820527
Alignment:
| Q |
1 |
tcagcttcatctaatttgtcgtctacgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaa |
100 |
Q |
| |
|
|||||||||||| |||| || || |||| ||||||| ||||||||||| |||| |||||| || ||||||||||||||||| ||| ||||||||||| |
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| T |
34820389 |
tcagcttcatctgatttatcttccgcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaa |
34820488 |
T |
|
| Q |
101 |
caaaactactattatttccagcttcatctaacttgtcgt |
139 |
Q |
| |
|
|||||||| |||||||| |||||||||| | ||||||| |
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|
| T |
34820489 |
caaaactaatattatttttagcttcatctgatttgtcgt |
34820527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 34820180 - 34820278
Alignment:
| Q |
26 |
cgagatgatggttaacctcaacttccaaagccacctttgccttaccaacatcattttttgtgatactctcgtcaacaaaactactattatttccagctt |
124 |
Q |
| |
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|||| ||||||| ||||||| ||||||||| ||||| || | ||||||||| |||||||||||| ||||||||||||||||||||||||| | |||||| |
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| T |
34820180 |
cgagttgatggtcaacctcagcttccaaagtcacctatgacgtaccaacattattttttgtgatgctctcgtcaacaaaactactattatattcagctt |
34820278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 34819946 - 34819985
Alignment:
| Q |
68 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
107 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||||| |
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| T |
34819946 |
taccatcatcatttttggtgatactctcgtcaacaaaact |
34819985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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