View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_high_23 (Length: 203)
Name: NF9056_high_23
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 17391993 - 17391822
Alignment:
| Q |
13 |
tcaaatttgtcaaatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccacgccacg |
112 |
Q |
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| T |
17391993 |
tcaaatttgtcaaatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccatgccacg |
17391894 |
T |
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| Q |
113 |
tagttttgctgcttcaagccaattgtcgaaactcaaacagccatcagcctcttcctcccagagttcagacca |
184 |
Q |
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| T |
17391893 |
tagttttgctgcttcaagccaattgtcgaaactcaaacagccatcagcctcttcctcccagagttcagacca |
17391822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 17383190 - 17383078
Alignment:
| Q |
21 |
gtcaaatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccacgccacgtagttttg |
120 |
Q |
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| T |
17383190 |
gtcaaatgcagatgcataagtgttttacagcagaaaatgctaggtgccaattgaacattgaacaagactagagtgagattctccacgccacgtcgttttg |
17383091 |
T |
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| Q |
121 |
ctgcttcaagcca |
133 |
Q |
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| T |
17383090 |
ctgcttcgagcca |
17383078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 26053865 - 26054026
Alignment:
| Q |
21 |
gtcaaatacagacgcagaagtgttttacagcagaaaatggtaggtgccaatggaacatttaacaagtgtagatagagacgctccacgccacgtagttttg |
120 |
Q |
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| T |
26053865 |
gtcaaatgcagatgcacaagtgttttacagcagaaaatggtaggtgccaatggaacatctaacaagtgtagatagagatcctccacgccacgtcgttttg |
26053964 |
T |
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| Q |
121 |
ctgcttcaagccaattgtcgaaactcaaacagccatcagcctcttcctcccagagttcagac |
182 |
Q |
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| T |
26053965 |
ttgcttcaagccaattgtcgaaactcaaacagctgtcagcctcgtcctcccagagttcagac |
26054026 |
T |
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