View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_high_3 (Length: 557)
Name: NF9056_high_3
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 125 - 539
Target Start/End: Complemental strand, 40166878 - 40166468
Alignment:
| Q |
125 |
catttagatattgaagttgagcacgagatattggtaaagaattcgagcacattatgcaagtaatcaacaattgaaattttaactcttatgtgcataaaaa |
224 |
Q |
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| T |
40166878 |
catttagatattgaagttgagcacgacatattggtaaagaattcgagcacattatgcaagtaatcaacaattgaaattttaactcttacgtgcataaaaa |
40166779 |
T |
|
| Q |
225 |
atatttggttggaatacgaaactcattttatatatccaacaaatgttacctccagtacacgaacacatacatactgtacaagnnnnnnnnnnnnncttct |
324 |
Q |
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| T |
40166778 |
atatttggttggaatacgaaactcattttatatatccaacaaatgttacctccagtacacgaacacatacatactgtacaag----ttttttttcctcct |
40166683 |
T |
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| Q |
325 |
tcttctaattattgcccaatcaaattggtgatagaatccaccatctannnnnnngggatagtgttgtacattgcgagaagaattctcgcgagtgaatcac |
424 |
Q |
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| T |
40166682 |
tcttctaattattgcctgatcaaattggtgatagaatccaccatctatttttttgggatagtgttgtacatcgcgagatttcttctcgcgagtgaatcac |
40166583 |
T |
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| Q |
425 |
gaatatgcaaatgcttttagaacaataaaaatataggctccacttaccataaaagcagttatcgaaataaaaggaggtgttatttgtctgtcgtaaatga |
524 |
Q |
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| T |
40166582 |
aaatatgcaaatgcttttagaacaataaaaatataggctccacttaccataaaggcagttgtcgaaataaaaggaggtgttatttgtctgtcgtgaatga |
40166483 |
T |
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| Q |
525 |
ttttgtcgctgtatg |
539 |
Q |
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| T |
40166482 |
ttttgtcgctgtatg |
40166468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 40166989 - 40166942
Alignment:
| Q |
11 |
gaagcagagaggcgacatcctcctcatattcaagtgagtagttccttg |
58 |
Q |
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| T |
40166989 |
gaagcagagaggcgacatcctcctcatattcaagtgagtagttccttg |
40166942 |
T |
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