View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_high_5 (Length: 496)
Name: NF9056_high_5
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Original strand, 44926311 - 44926779
Alignment:
| Q |
11 |
ccagaagggtgaaactagcgacaatgataataagaagactacaaaagaatcaaagaaggttttgtcaaatatataatttcatcttttatgtttaactcat |
110 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44926311 |
ccagaagggtgaaagtagcgataatgataataagaagactacaaaagaatcaaagaaggttt-gtcaaatatataatttcatcttttatgtttaactcat |
44926409 |
T |
|
| Q |
111 |
ttctgtttgttttgcattgtggcttatttatgcatgcttgcaggaagttcctcctgacaatgcctttgagaagaacataagacgagagcttatctctcca |
210 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44926410 |
ttctgtttgttttgcattgcggcttatttatgcatacttgcaggaagttcctcctgacaatgcctttgagaagaacataagacgagagcttatctctgca |
44926509 |
T |
|
| Q |
211 |
aacgagataggggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttccccttagaagaccagatatat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926510 |
aacgagataggggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttccccttagaagaccagatatat |
44926609 |
T |
|
| Q |
311 |
tcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagc |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926610 |
tcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagc |
44926709 |
T |
|
| Q |
411 |
tggagcaagtttcatcaatgtctctgcatccacaatctcttcatgttggtttggaaacggtgaaaagaac |
480 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926710 |
tggagcaagtttcatcaatgtctctgcatccacaatctcttcatgttggtttggaaacggtgaaaagaac |
44926779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 79 - 452
Target Start/End: Original strand, 44934824 - 44935191
Alignment:
| Q |
79 |
atatataatttcatcttttatgtttaactcatttctgtttgttttgcattgtggcttatttatgcatgcttgcaggaagttcctcctgacaatgcctttg |
178 |
Q |
| |
|
|||||||| |||| ||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||| |
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| T |
44934824 |
atatataagttcagcttttatgtttaacttgtttccgtttgttttgcattgctgctaatttatgcatgcttgcag--agt----cctgacaatgcctttg |
44934917 |
T |
|
| Q |
179 |
agaagaacataagacgagagcttatctctccaaacgagataggggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagc |
278 |
Q |
| |
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|| | |||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
44934918 |
aggaatgcataagacaagagcttatccctgcaaacgagataaaggtgactttttcagatattggtgctttggatgatgttaaagaatcacttcaagaagc |
44935017 |
T |
|
| Q |
279 |
agttatgcttccccttagaagaccagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaag |
378 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44935018 |
ggttatgcttccccttagaagaccagatctattcaaaggtgatggggttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaag |
44935117 |
T |
|
| Q |
379 |
acaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctctgcatccacaatctcttc |
452 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |
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|
| T |
44935118 |
acaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcatcaatgtctctccatccaccatcacttc |
44935191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 95 - 435
Target Start/End: Original strand, 45988220 - 45988560
Alignment:
| Q |
95 |
tttatgtttaactcatttctgtttgttttgcattgtggcttatttatgcatgcttgcaggaagttcctcctgacaatgcctttgagaagaacataagacg |
194 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| | | |||||||||||||||||| || ||| ||||||||||||||||||| | |||||||| |
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|
| T |
45988220 |
tttatgtttaacttgtttctgtttgttttgtattgctgttaatttatgcatgcttgcagaaacttcatcctgacaatgcctttgaggaatgcataagaca |
45988319 |
T |
|
| Q |
195 |
agagcttatctctccaaacgagataggggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttcccctt |
294 |
Q |
| |
|
|||||||||| || |||| ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
45988320 |
agagcttatccctgcaaatgagatagaagtgactttttcagatattggtgctttggatgatattaaagaatcacttcaagaagcggttatgcttcccctt |
45988419 |
T |
|
| Q |
295 |
agaagaccagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaagg |
394 |
Q |
| |
|
||||||||| || |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45988420 |
agaagaccatatctattcaaaggcgatgggcttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgctcgcaaagg |
45988519 |
T |
|
| Q |
395 |
caattgcaaatgaagctggagcaagtttcatcaatgtctct |
435 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
45988520 |
caattgctaatgaatctggagcaagtttcatcaatgtctct |
45988560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 44934488 - 44934554
Alignment:
| Q |
11 |
ccagaagggtgaaactagcgacaatgataataagaagactacaaaagaatcaaagaaggttttgtcaa |
78 |
Q |
| |
|
|||| ||||||||| |||||| || ||||| |||||||||| |||||||||||| |||| |||||||| |
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|
| T |
44934488 |
ccaggagggtgaaagtagcgagaaggataacaagaagactaaaaaagaatcaaa-aagggtttgtcaa |
44934554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 39716282 - 39716201
Alignment:
| Q |
347 |
tattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaa |
428 |
Q |
| |
|
|||| ||||| || || ||||| || ||||| |||||||| |||||||| | |||| |||||||||||||| ||||||||| |
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|
| T |
39716282 |
tattgcttttcggtccccctggcacgggaaaaacaatgcttgcaaaggctgtagcaactgaagctggagcaaatttcatcaa |
39716201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 200 - 434
Target Start/End: Complemental strand, 11094871 - 11094640
Alignment:
| Q |
200 |
ttatctctccaaacgagataggggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttccccttagaag |
299 |
Q |
| |
|
||||| || |||| |||||||| || || || ||||||| |||||||| ||||| | |||||||| |||||||| ||| ||||||||||||||||| |
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|
| T |
11094871 |
ttatccctgcaaatgagataggtgttacattcgcagatatcggtgcattagatgagataaaagaatcgcttcaagagctagtaatgcttccccttagaag |
11094772 |
T |
|
| Q |
300 |
accagatatattcaaaggggatggggttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaatt |
399 |
Q |
| |
|
|||||| | |||||||| ||| |||| |||||||||| |||| |||||||||| || || |||||||| ||||| |||||||| |||||||| ||| |
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|
| T |
11094771 |
accagaccttttcaaagg---tggacttctaaagccatgtagaggtatattacttttcggtccacctggtaccggaaaaacaatgctagcaaaggcgatt |
11094675 |
T |
|
| Q |
400 |
gcaaatgaagctggagcaagtttcatcaatgtctc |
434 |
Q |
| |
|
|| |||||||| |||||||||||||| || ||||| |
|
|
| T |
11094674 |
gcgaatgaagcaggagcaagtttcattaacgtctc |
11094640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 32199764 - 32199839
Alignment:
| Q |
222 |
ggtgactttttcagatattggtgcattggatgacgttaaagaatcacttcaagaagcagttatgcttccccttaga |
297 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| || |||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
32199764 |
ggtgactttttcatatattagtgcattaaatgatgtcaaagaatcacttcaagaagcggttatacttccccttaga |
32199839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 431
Target Start/End: Original strand, 2489637 - 2489742
Alignment:
| Q |
326 |
ttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcat |
425 |
Q |
| |
|
|||| ||||| |||| ||| |||| || ||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |
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|
| T |
2489637 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
2489736 |
T |
|
| Q |
426 |
caatgt |
431 |
Q |
| |
|
||||| |
|
|
| T |
2489737 |
taatgt |
2489742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 41591320 - 41591244
Alignment:
| Q |
355 |
tttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcatcaatgt |
431 |
Q |
| |
|
||||| |||||||| || || || |||||||| || ||||| |||||||| |||||||||||||||||||| ||||| |
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|
| T |
41591320 |
tttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgt |
41591244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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