View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_high_7 (Length: 441)
Name: NF9056_high_7
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Original strand, 6611692 - 6612107
Alignment:
| Q |
5 |
gtggagaagcagagagaaactaaccttggcaagtttcttttctttgcgagcttgtctctccctctcatcgtattcttggttttccttttctaccaaccga |
104 |
Q |
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| T |
6611692 |
gtggataaacagagagaaactaaccttggcaagtttcttttctttgcgagcttgtctctccctctcatcgtattcttggttttccttttctaccaaccga |
6611791 |
T |
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| Q |
105 |
atgagggtgtcgcacctccttgcaagttcctgtgttgtgcgagacttaacaaaccaatcaaatctaaacaagggtgatgttcgaaacgctgccttcaact |
204 |
Q |
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| T |
6611792 |
atgagggtgtcgcacctccttgcaagttcctgtgttgtgcgagacttaacaaaccaatcaaatctaaacaagggtgatgttcgaaacgctgccttcaact |
6611891 |
T |
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| Q |
205 |
catcccagttcccatagccaagtttgtgaaccatgcatatctgcaaatttatagtaggaaaatataagatttacaaaaccatggaaggactgtggtgggc |
304 |
Q |
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| T |
6611892 |
catcccagttcccatagccaagtttgtgaaccatgcatatctgcaaatttatagtaggaaaatataagatttacaaaaccatggaaggactgtggtgggc |
6611991 |
T |
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| Q |
305 |
atgaagaaataaatcaaattcctaccatgaatcggtcacattcttcattgtatagcttccctttgttttgcccatactgcaccttcaactctagccaagg |
404 |
Q |
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| T |
6611992 |
atgaagaaataaatcaaattcctaccatgaatcggtcacattcttcattgtatagcttccctttgttttgcccatactgtaccttcaactctagccaagg |
6612091 |
T |
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| Q |
405 |
attcttgtagcggtcc |
420 |
Q |
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| T |
6612092 |
attcttgtagcggtcc |
6612107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 32 - 246
Target Start/End: Complemental strand, 49259549 - 49259335
Alignment:
| Q |
32 |
ggcaagtttcttttctttgcgagcttgtctctccctctcatcgtattcttggttttccttttctaccaaccgaatgagggtgtcgcacctccttgcaagt |
131 |
Q |
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| T |
49259549 |
ggcaagtttcttctctttacgagcttgtctctctctttcatcatattcttgattttccttctctaccaaacgaatgagggtgtcacatctccttgttaat |
49259450 |
T |
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| Q |
132 |
tcctgtgttgtgcgagacttaacaaaccaatcaaatctaaacaagggtgatgttcgaaacgctgccttcaactcatcccagttcccatagccaagtttgt |
231 |
Q |
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| T |
49259449 |
tcctgagttgtgcgtgactttacaaaccaatcaaaacgaaacaagggtgacattcgaaatgcagctttcaattcatcccaattaccatagccaagcttgt |
49259350 |
T |
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| Q |
232 |
gaaccatgcatatct |
246 |
Q |
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| T |
49259349 |
gagtcatgcatatct |
49259335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 49259206 - 49259115
Alignment:
| Q |
328 |
accatgaatcggtcacattcttcattgtatagcttccctttgttttgcccatactgcaccttcaactctagccaaggattcttgtagcggtc |
419 |
Q |
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| T |
49259206 |
accatgaatcgatcacattcttcattgtataatttccctttgttttgtccatatagtatcttcaactctagccaaggattcttgtagcggtc |
49259115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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