View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_1 (Length: 1004)
Name: NF9056_low_1
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 859; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 27 - 995
Target Start/End: Complemental strand, 27107828 - 27106850
Alignment:
| Q |
27 |
tttggttcactattgagatgtgtgtgtacttatgcagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgtt |
126 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27107828 |
tttggttcactattgagatgtgtgtgtacttatgcagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgtt |
27107729 |
T |
|
| Q |
127 |
aggttcaaagaggttagttagtacactcaagattctaatcattgaagggtcttttctttttagttgctaaacagtataaaactcagcaaaaatatggcaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27107728 |
aggttcaaagaggttagttagtacactcaagattctaatcattgaagggtcttttctttttagttgctaaacagtataaaactcagcaaaaatatggcaa |
27107629 |
T |
|
| Q |
227 |
tgattcttgcttttcaagactcctacttccnnnnnnncctttctgtcagggtcgactcaagggtaaggctactaaggtcctagtttagacccaccaacaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27107628 |
tgattcttgcttttcaagactcctacttcctttgtttccattctgtcagggttgactcaagggtaaggctactaaagtcctagtttagacccaccaacaa |
27107529 |
T |
|
| Q |
327 |
aaatttatttttcattatatttccaaattggctttaggcctcacctactatcgaaaattattggatcggtcctgctttctgttttgttaatttgtgctta |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27107528 |
aaatttatttttcattatatttccaaattggctttaggcctcacctactatcgaaaattattggatcggtcctgctttctgttttgttaatttgtgctta |
27107429 |
T |
|
| Q |
427 |
tgtagtcttctagcttattggcttaaaactcaatgtcttatggattgggaatgtgagtatcacagaaaagtaacatacatgagcatttgagttttgtgag |
526 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27107428 |
tgtagtcttctagcttattggtttaaaactcaatgtcttatggattgggaatgtgagtatcacagaaaagtaacatacatgagcatttgagttttgtgag |
27107329 |
T |
|
| Q |
527 |
ctgtacatggaatgtgtgtggttgtgggaaataattacgaaataccaccaatctatgtgtcactaacacttcatattgaagacatgtctggtgtctgact |
626 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27107328 |
ctgtacatagaatgtgtgtggttgtgggaaataattatgaaataccaccaatctatgtgtcactaacacttcatattgaagacatgtctggtgtctgact |
27107229 |
T |
|
| Q |
627 |
catgtagatatggataccgacatgacaccagtacatgtggttatattcaatcgctttcataactttttaccagtctctgtcagtttcagtattgtctagt |
726 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
27107228 |
catgtagatatggataccgacatgacaccagtacatgtggttatattcaatcgctttcataactttttaccagtgtctgtcagtttcagtattgtctagt |
27107129 |
T |
|
| Q |
727 |
gtccgtgtatgtaacggtgcttcatagctaccaatactgtcacaaaacatagaatgtatgtgtg----------tgtggaaaataattacgaaataccaa |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
27107128 |
gtccgtgtatgtaacggtgcttcatagctaccaatactgtcacaaaacatagaatgtatgtgtgtgtgtgtgtgtgtggaaaataattacgaaataccac |
27107029 |
T |
|
| Q |
817 |
caatcaatgtatcactaacatttcatattgaagacgtgtctggtgtccaactcacgtggatatggataccgacgcaacaccaatacatgcagttatattc |
916 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27107028 |
caatctatgtatcactaacacttcatattgaagacgtgtctggtgtccgactcacgtagatatggataccgacgcgacaccaatacatgcagttatattc |
27106929 |
T |
|
| Q |
917 |
aatagttttcataactttttaccggtgtctgtgtcagtctcagtattgtgtctagtgtccgtgtatgtatctctgcttc |
995 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |
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| T |
27106928 |
aatagttttcataactttttaccggtgtctgtgtcagtttcagtattgtgtctagtgtctgtgtatgtatctgtgcttc |
27106850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 539 - 773
Target Start/End: Complemental strand, 27107064 - 27106826
Alignment:
| Q |
539 |
tgtgtgtggttgtgggaaataattacgaaataccaccaatctatgtgtcactaacacttcatattgaagacatgtctggtgtctgactcatgtagatatg |
638 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
27107064 |
tgtgtgtgtgtgtggaaaataattacgaaataccaccaatctatgtatcactaacacttcatattgaagacgtgtctggtgtccgactcacgtagatatg |
27106965 |
T |
|
| Q |
639 |
gataccgacatgacaccagtacatgtggttatattcaatcgctttcataactttttacc--agtctctgtcagtttcagtat--tgtctagtgtccgtgt |
734 |
Q |
| |
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||||||||| ||||||| |||||| |||||||||||| | ||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||| |
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| T |
27106964 |
gataccgacgcgacaccaatacatgcagttatattcaatagttttcataactttttaccggtgtctgtgtcagtttcagtattgtgtctagtgtctgtgt |
27106865 |
T |
|
| Q |
735 |
atgtaacggtgcttcatagctaccaatactgtcacaaaa |
773 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||||||| |
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| T |
27106864 |
atgtatctgtgcttcatagctagcaatactgtcacaaaa |
27106826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 34077504 - 34077584
Alignment:
| Q |
61 |
cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggtt |
141 |
Q |
| |
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||||||||||| ||||| || || ||||| || |||||||||||||||| |||||| |||||||| |||||||| |||||| |
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| T |
34077504 |
cagattgatgaaaatgtacagagagaaattataaaccatagatcattgaggcatcccaatattgtcaggttcaaggaggtt |
34077584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 41118737 - 41118816
Alignment:
| Q |
61 |
cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggt |
140 |
Q |
| |
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||||||||||| | |||||| ||||| || || ||||| |||||||| | ||||||||||||| | || ||||||||||| |
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| T |
41118737 |
cagattgatgagagtgtccagagggacataattaaccacagatcattaaggcatcctaatattatcagattcaaagaggt |
41118816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 12309267 - 12309347
Alignment:
| Q |
61 |
cagattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggtt |
141 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| || || ||||||||| ||| |||||| |||||||| |||||||| |||||| |
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|
| T |
12309267 |
cagatagatgaaaatgtacaaagggaaattataaatcatagatcactgaggcatcccaatattgtcaggttcaaggaggtt |
12309347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 37601865 - 37601943
Alignment:
| Q |
62 |
agattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggt |
140 |
Q |
| |
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|||||||||| | || |||||||| || || || ||||| |||||||||||||| ||||||||||| || |||||||| |
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|
| T |
37601865 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggt |
37601943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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