View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9056_low_10 (Length: 543)
Name: NF9056_low_10
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Complemental strand, 27878618 - 27878102
Alignment:
| Q |
18 |
ggattgacagtggcggcaaaagggtcaaagaaagttttgaagaaacttgatgaggttcttgaaaagtatagtcttctttctgttgagaaggtgaagggtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27878618 |
ggattgacagtggcggcaaaagggtcaaagaaagttttgaagaaacttgatgaggttcttgaaaagtacagtcttctttctgttgagaaggtgaagggtg |
27878519 |
T |
|
| Q |
118 |
ttaaagggtgggaggttttggagaaaaaggaagatgtagaggaaaattctgctgctgcttattggacaacgttggcaccaaacgtggaggattatagtgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878518 |
ttaaagggtgggaggttttggagaaaaaggaagatgtagaggaaaattctgctgctgcttattggacaacgttggcaccaaacgtggaggattatagtgg |
27878419 |
T |
|
| Q |
218 |
aagatttggtagatggattgctgcaggttcaggacaaatgatcagaggaattttgtggtgtggtgatgttactgttgatagattgaaatggggtgatgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878418 |
aagatttggtagatggattgctgcaggttcaggacaaatgatcagaggaattttgtggtgcggtgatgttactgttgatagattgaaatggggtgatgat |
27878319 |
T |
|
| Q |
318 |
ttcatgaagaagaggttgcaacctggttcttctcaatcacagattagtccacttgccctgaatagtatgaaaaggtaagaaatttgaaaaatttctatcg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27878318 |
ttcatgaagaagaggttgcaacctggttcttctcaatcacagattagtccacttgccctgaatagtatgaaaaggtaagaaatttgaaaaaaatctatca |
27878219 |
T |
|
| Q |
418 |
ctgaatgttttgtttcgtgttttatgcaattttgatgatgttatgtatgtgggannnnnnncagtgttaagaagttgacaaagatgtctgagaaagtggc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878218 |
ctgaatgttttgtttcgtgttttatgcaattttgatgatgttatgtatgtgggatttttttcagtgttaagaagttgacaaagatgtctgagaaagtggc |
27878119 |
T |
|
| Q |
518 |
tcttggtgttctctctg |
534 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
27878118 |
tcttggtgttctctctg |
27878102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 330
Target Start/End: Complemental strand, 31870249 - 31870186
Alignment:
| Q |
267 |
attttgtggtgtggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaaga |
330 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||| |||| | |||||||||| |
|
|
| T |
31870249 |
attttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaaga |
31870186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University