View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9056_low_12 (Length: 533)

Name: NF9056_low_12
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9056_low_12
NF9056_low_12
[»] chr7 (9 HSPs)
chr7 (190-405)||(22280067-22280282)
chr7 (18-105)||(22279875-22279967)
chr7 (424-476)||(22280270-22280322)
chr7 (339-397)||(6049249-6049305)
chr7 (339-397)||(25276505-25276561)
chr7 (357-394)||(44016537-44016574)
chr7 (424-472)||(6049205-6049253)
chr7 (350-402)||(6067064-6067115)
chr7 (340-384)||(11355655-11355699)
[»] chr3 (7 HSPs)
chr3 (340-384)||(880090-880134)
chr3 (333-397)||(1620310-1620373)
chr3 (357-394)||(7418330-7418367)
chr3 (340-384)||(1313772-1313816)
chr3 (339-394)||(14634296-14634349)
chr3 (336-384)||(18163031-18163078)
chr3 (339-394)||(48390157-48390213)
[»] chr1 (5 HSPs)
chr1 (339-398)||(10116137-10116194)
chr1 (339-401)||(28279630-28279690)
chr1 (336-394)||(21353199-21353257)
chr1 (356-402)||(37990997-37991042)
chr1 (339-384)||(17324483-17324528)
[»] chr6 (7 HSPs)
chr6 (339-397)||(7294198-7294255)
chr6 (357-394)||(5165716-5165753)
chr6 (357-394)||(12166021-12166058)
chr6 (332-389)||(28078045-28078101)
chr6 (357-393)||(19701780-19701816)
chr6 (339-394)||(22351709-22351762)
chr6 (340-384)||(30728675-30728718)
[»] chr4 (10 HSPs)
chr4 (339-384)||(18311220-18311265)
chr4 (339-384)||(18409197-18409242)
chr4 (339-397)||(3578537-3578592)
chr4 (339-397)||(16185691-16185749)
chr4 (339-392)||(4558581-4558634)
chr4 (339-384)||(25358074-25358119)
chr4 (351-384)||(37312940-37312973)
chr4 (340-389)||(40091265-40091314)
chr4 (351-384)||(53405577-53405610)
chr4 (334-397)||(5516088-5516149)
[»] chr8 (6 HSPs)
chr8 (339-394)||(17847943-17847997)
chr8 (339-384)||(5372030-5372075)
chr8 (351-384)||(21482749-21482782)
chr8 (357-394)||(26268107-26268144)
chr8 (356-384)||(2467900-2467928)
chr8 (356-384)||(2467999-2468027)
[»] chr2 (7 HSPs)
chr2 (339-398)||(28570259-28570317)
chr2 (339-397)||(34574995-34575051)
chr2 (339-384)||(17849478-17849523)
chr2 (339-384)||(19008001-19008046)
chr2 (351-384)||(22874470-22874503)
chr2 (351-384)||(45238858-45238891)
chr2 (328-384)||(37962785-37962840)
[»] chr5 (3 HSPs)
chr5 (339-393)||(35430560-35430613)
chr5 (339-402)||(15445125-15445185)
chr5 (357-393)||(10627636-10627672)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 190 - 405
Target Start/End: Original strand, 22280067 - 22280282
Alignment:
Q  190 taattatgtcactattgttagattttcataatcatctaaaacgaagttctacctaaacattaacaacagaaatgataatcagttatgaaacgtattataa 289  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  22280067 taattatgtcactattgttagattttcataattatctaaaacgaaattctacctaaatattaacaacagaaatgataatcagttatgaaacatattataa 22280166  T
Q  290 ttgaaatccaaattgtccaaaatattaggagagcaacaaatacttattatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaa 389  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22280167 ttgaaatccaaattgtccaaaatattaggagagaaacaaatacttattatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaa 22280266  T
Q  390 ttaatcaaacaattaa 405  Q
    ||||||||||||||||    
T  22280267 ttaatcaaacaattaa 22280282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 22279875 - 22279967
Alignment:
Q  18 tttacaactagtaacttaattaaatgaaaatgtttcgaaaattgaatgatctc-----tgagtggcctaaaatactaacttcaaatctgtgcc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  22279875 tttacaactagtaacttaattaaatgaaaatgtttcgaaaattgaatgatctctgagttgagtggcctaaaatactaacttcaaatctgtgcc 22279967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 22280270 - 22280322
Alignment:
Q  424 atcaagcaattaatattaacgtgggtaacaattataatgataagcaaaacttt 476  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  22280270 atcaaacaattaagattaacgtgggtaacaattataatgataagcaaaacttt 22280322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 6049305 - 6049249
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||||||||||||||  |||||||||||| | ||||||||| |||| ||||||||||||    
T  6049305 tgaattcgttaaaaa--tcacaccaataaaatacttgatgtatggagcaaattaatcaa 6049249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 25276561 - 25276505
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||||||| ||||||| |||||||||||| || ||||||||||||||||| ||||||||    
T  25276561 tgaattcgctaaaaaa-tcacaccaataacaa-cttgatgtgtggatcaagttaatcaa 25276505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 44016537 - 44016574
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  44016537 cacaccaataataaacttgatgcgtggagcaaattaat 44016574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 6049253 - 6049205
Alignment:
Q  424 atcaagcaattaatattaacgtgggtaacaattataatgataagcaaaa 472  Q
    |||||||||  ||||| ||||||||||||||||||||  ||||||||||    
T  6049253 atcaagcaaccaatatcaacgtgggtaacaattataaacataagcaaaa 6049205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 6067064 - 6067115
Alignment:
Q  350 aaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaaacaat 402  Q
    ||||| ||||||||| || | |||||||||||||| |||||||||||||||||    
T  6067064 aaaaaatcacaccaacaa-atacttgatgtgtggagcaaattaatcaaacaat 6067115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 11355699 - 11355655
Alignment:
Q  340 gaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    ||||||| | ||||| |||||||||||||||| ||||||||||||    
T  11355699 gaattcgatgaaaaaatcacaccaataataaatttgatgtgtgga 11355655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 880090 - 880134
Alignment:
Q  340 gaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    ||||||| | |||||||||||||||||||||||||||||||||||    
T  880090 gaattcgatgaaaaagtcacaccaataataaacttgatgtgtgga 880134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 1620310 - 1620373
Alignment:
Q  333 ttattatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||| ||||||  |||||||||||    
T  1620310 ttattgtgaattcgttaaaaaaatcacaccaataa-aaacttgatatgtggagaaaattaatcaa 1620373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 7418367 - 7418330
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  7418367 cacaccaataataaacttgatgcgtggaacaaattaat 7418330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 1313816 - 1313772
Alignment:
Q  340 gaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    ||||||| | ||||| |||||||||||| ||||||||||||||||    
T  1313816 gaattcgatgaaaaactcacaccaataacaaacttgatgtgtgga 1313772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 14634296 - 14634349
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||| ||||  |||||||||||| | |||||||||||||| |||||||||    
T  14634296 tgaattcgttgaaaa--tcacaccaataaaatacttgatgtgtggaacaaattaat 14634349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 18163078 - 18163031
Alignment:
Q  336 ttatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    ||||||||||| | ||||| |||||||||||||||| ||||||||||||    
T  18163078 ttatgaattcgatgaaaaa-tcacaccaataataaatttgatgtgtgga 18163031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 48390157 - 48390213
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaat-aataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||| | |||||||||||||| || |||||||||| ||||| |||||||||    
T  48390157 tgaattcgttgagaaagtcacaccaataaaaaaacttgatgcgtggagcaaattaat 48390213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 10116194 - 10116137
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaaa 398  Q
    |||||||||||||||  |||||||||||| | |||||||||||||| |||||||||||||    
T  10116194 tgaattcgttaaaaa--tcacaccaataaaatacttgatgtgtggagcaaattaatcaaa 10116137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 401
Target Start/End: Complemental strand, 28279690 - 28279630
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaaacaa 401  Q
    |||||||||||||||  |||||||||||| | |||||||||||||| ||| |||| |||||||    
T  28279690 tgaattcgttaaaaa--tcacaccaataaaatacttgatgtgtggagcaagttaaacaaacaa 28279630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 21353199 - 21353257
Alignment:
Q  336 ttatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    ||||||||||||| | |||  ||||||||||| |||||||||| ||||| |||||||||    
T  21353199 ttatgaattcgttgagaaaaccacaccaataacaaacttgatgcgtggagcaaattaat 21353257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 37991042 - 37990997
Alignment:
Q  356 tcacaccaataataaacttgatgtgtggatcaaattaatcaaacaat 402  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  37991042 tcacaccaataa-aaatttgatgtgtggatcaaattaatcaagcaat 37990997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 17324483 - 17324528
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||| | ||||| |||||||||||| ||||||||||||||||    
T  17324483 tgaattcgatgaaaaactcacaccaataacaaacttgatgtgtgga 17324528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 7294255 - 7294198
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||  |||||||||||    
T  7294255 tgaattcgttaaaaaa-tcacaccaataaaatacttgatgtgtggagaaaattaatcaa 7294198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 5165716 - 5165753
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  5165716 cacaccaataataaacttgatgcgtggagcaaattaat 5165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 12166021 - 12166058
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  12166021 cacaccaataataaacttgatgcgtggagcaaattaat 12166058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 28078045 - 28078101
Alignment:
Q  332 cttattatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaa 389  Q
    |||||| ||||||| |||||||| |||||||||||| | |||||||||||||| ||||    
T  28078045 cttattgtgaattccttaaaaaa-tcacaccaataaaatacttgatgtgtggagcaaa 28078101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 19701780 - 19701816
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaa 393  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  19701780 cacaccaataataaacttgatgcgtggaacaaattaa 19701816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 394
Target Start/End: Original strand, 22351709 - 22351762
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    ||||||||||  |||| ||||||||||||  ||||||||||||||| |||||||||    
T  22351709 tgaattcgttgtaaaaatcacaccaataa--aacttgatgtgtggagcaaattaat 22351762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 30728675 - 30728718
Alignment:
Q  340 gaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    ||||||||| ||||| |||||||||||| ||||||||||||||||    
T  30728675 gaattcgttgaaaaa-tcacaccaataacaaacttgatgtgtgga 30728718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 18311220 - 18311265
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||| | ||||| |||||||||||||||||||||||||||||    
T  18311220 tgaattcgatgaaaaaatcacaccaataataaacttgatgtgtgga 18311265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 18409197 - 18409242
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||| | ||||| |||||||||||||||||||||||||||||    
T  18409197 tgaattcgatgaaaaaatcacaccaataataaacttgatgtgtgga 18409242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 3578537 - 3578592
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||||||||||||||| ||||||||||||  ||||||||||| | ||||||||||||||    
T  3578537 tgaattcgttaaaaaa-tcacaccaataa--aacttgatgtgcgaatcaaattaatcaa 3578592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 16185691 - 16185749
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||||||||| ||||  |||||||||||| | ||||||||| |||| ||||||||||||    
T  16185691 tgaattcgttgaaaagatcacaccaataaaatacttgatgtatggagcaaattaatcaa 16185749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 392
Target Start/End: Complemental strand, 4558634 - 4558581
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaatta 392  Q
    |||||||||| | |||  |||||||||||||||||||||| ||||| |||||||    
T  4558634 tgaattcgttgagaaaaccacaccaataataaacttgatgcgtggagcaaatta 4558581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 25358119 - 25358074
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||||| ||||| |||||||||||| | ||||||||||||||    
T  25358119 tgaattcgttgaaaaaatcacaccaataaaatacttgatgtgtgga 25358074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 37312940 - 37312973
Alignment:
Q  351 aaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||| |||||||||||||||||||||||||||||    
T  37312940 aaaaatcacaccaataataaacttgatgtgtgga 37312973  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 40091265 - 40091314
Alignment:
Q  340 gaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaa 389  Q
    ||||||| | ||||| |||||||||||| |||||||||||||||| ||||    
T  40091265 gaattcgatgaaaaattcacaccaataacaaacttgatgtgtggagcaaa 40091314  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 53405610 - 53405577
Alignment:
Q  351 aaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||| |||||||||||||||||||||||||||||    
T  53405610 aaaaatcacaccaataataaacttgatgtgtgga 53405577  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 397
Target Start/End: Original strand, 5516088 - 5516149
Alignment:
Q  334 tattatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||| ||||| |||||||||  |||||||||||| | ||||||||||||||  |||||||||||    
T  5516088 tattgtgaatccgttaaaaa--tcacaccaataaaatacttgatgtgtggagtaaattaatcaa 5516149  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 17847997 - 17847943
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||  ||||||||    
T  17847997 tgaattcgttaaaaaa-tcacaccaataaaatacttgatgtgtggaaaaaattaat 17847943  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Original strand, 5372030 - 5372075
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||| ||||||| ||||| |||||| ||||||||||||||||    
T  5372030 tgaattcgataaaaaaatcacatcaataacaaacttgatgtgtgga 5372075  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 21482782 - 21482749
Alignment:
Q  351 aaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||| |||||||||||||||||||||||||||||    
T  21482782 aaaaatcacaccaataataaacttgatgtgtgga 21482749  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Original strand, 26268107 - 26268144
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaat 394  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  26268107 cacaccaataataaacttgatgcgtggagcaaattaat 26268144  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 2467900 - 2467928
Alignment:
Q  356 tcacaccaataataaacttgatgtgtgga 384  Q
    |||||||||||||||||||||||||||||    
T  2467900 tcacaccaataataaacttgatgtgtgga 2467928  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 384
Target Start/End: Original strand, 2467999 - 2468027
Alignment:
Q  356 tcacaccaataataaacttgatgtgtgga 384  Q
    |||||||||||||||||||||||||||||    
T  2467999 tcacaccaataataaacttgatgtgtgga 2468027  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 28570259 - 28570317
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaaa 398  Q
    |||||||||||||||| ||||||| |||||| | |||||||||||| ||||| |||||||    
T  28570259 tgaattcgttaaaaaa-tcacaccgataatatatttgatgtgtggagcaaataaatcaaa 28570317  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 34574995 - 34575051
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaa 397  Q
    |||||||||||||||  |||||||||||| | |||||| ||||||| ||||||||||||    
T  34574995 tgaattcgttaaaaa--tcacaccaataaaatacttgacgtgtggaacaaattaatcaa 34575051  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 17849523 - 17849478
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||| | ||||| |||||||||||| ||||||||||||||||    
T  17849523 tgaattcgatgaaaaaatcacaccaataacaaacttgatgtgtgga 17849478  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 19008046 - 19008001
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||||||| | ||||| |||||||||||| ||||||||||||||||    
T  19008046 tgaattcgatgaaaaaatcacaccaataacaaacttgatgtgtgga 19008001  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 22874503 - 22874470
Alignment:
Q  351 aaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||| |||||||||||||||||||||||||||||    
T  22874503 aaaaatcacaccaataataaacttgatgtgtgga 22874470  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 45238858 - 45238891
Alignment:
Q  351 aaaagtcacaccaataataaacttgatgtgtgga 384  Q
    |||| |||||||||||||||||||||||||||||    
T  45238858 aaaaatcacaccaataataaacttgatgtgtgga 45238891  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 37962785 - 37962840
Alignment:
Q  328 aatacttattatgaattcgttaaaaaagtcacaccaataataaacttgatgtgtgga 384  Q
    ||||||| || |||||||| | ||||| ||||| |||||||||||||||||||||||    
T  37962785 aatacttgttgtgaattcgatgaaaaa-tcacatcaataataaacttgatgtgtgga 37962840  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 393
Target Start/End: Complemental strand, 35430613 - 35430560
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaa 393  Q
    |||||||||||||||| |||||||||||| | | |||||||||| ||||||||||    
T  35430613 tgaattcgttaaaaaa-tcacaccaataaaagatttgatgtgtgcatcaaattaa 35430560  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 15445125 - 15445185
Alignment:
Q  339 tgaattcgttaaaaaagtcacaccaataataaacttgatgtgtggatcaaattaatcaaacaat 402  Q
    |||||||||||||||   ||||||||||| | |||||||||||||| |||| ||||||| ||||    
T  15445125 tgaattcgttaaaaa---cacaccaataaaatacttgatgtgtggagcaaaataatcaagcaat 15445185  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 10627672 - 10627636
Alignment:
Q  357 cacaccaataataaacttgatgtgtggatcaaattaa 393  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  10627672 cacaccaataataaacttgatgcgtggagcaaattaa 10627636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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