View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_18 (Length: 481)
Name: NF9056_low_18
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 15 - 463
Target Start/End: Original strand, 35520327 - 35520775
Alignment:
| Q |
15 |
tggtgttgatagtagctggagtgggattggtgtggctttccctttgtgggccattagaagcagtagcagcaacatttattgacttagagtttttatgttg |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35520327 |
tggtgttgatagtagctggagtgcgattggtgtggctttctctttgtgggccattagaagcagtagcagcaacatttattgacttagagtttttctgttg |
35520426 |
T |
|
| Q |
115 |
ataaccaggtggatagacatgtaaggcaaaacatgtgtcaatagtatgattgcgtctaccacaattagtgcaggttcgattattagaaccacgacctcca |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520427 |
ataaccaggtggatagacatgtaaggcaaaccatgtgtcaatagtatgattgcgtctaccacaattagtgcaggttcgattattagaaccacgacctcca |
35520526 |
T |
|
| Q |
215 |
taatgacttccacggcctctaccgcgaccaccatggtgagcagaagcgaaactcgaataattattgccagaattagaagtagtttgctgaacctgcataa |
314 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520527 |
taatgacttccacgacctctgccgcgaccaccatggtgagcagaagcgaaactcgaataattattgccagaattagaagtagtttgctgaacctgcataa |
35520626 |
T |
|
| Q |
315 |
tagaagactggtgatcgacagaattatcagtaactgtagaaattaacatctgtcgttcttgttgaagaaccaaggagaagcatcgatcaatatcaggtaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520627 |
tagaagactggtgatcgacagaattatcagtaactgtagaaattaacatctgtcgttcttgttgaagaaccaaggagaagcatcgatcaatatcaggtaa |
35520726 |
T |
|
| Q |
415 |
aggatcgagaagcatgatttgagaccgaacacttgcatactgttcattc |
463 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35520727 |
aggattgagaagcatgatttgagaccgaacacttgcatattgttcattc |
35520775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 33765771 - 33765368
Alignment:
| Q |
15 |
tggtgttgatagtagctggagtgggattggtgtggctttccctttgtgggccattagaagcagtagcagcaacatttattgacttagagttttt--atgt |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33765771 |
tggtgttgatagtagctggagtgggattggcgtggctttctcattgtggggcattagaagcagtagcagcaacatttattgacttagagtttttttatgt |
33765672 |
T |
|
| Q |
113 |
tgataaccaggtggatagacatgtaaggcaaaacatgtgtcaatagtatgattgcgtctaccacaattagtgcaggttcgattattagaaccacgacctc |
212 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33765671 |
tgataaccaggtggatagccatgtaaggaaaaacatgtgtcaatagtatgattgcgtctaccacaattagtgcaggttcgattattagaaccacgacctc |
33765572 |
T |
|
| Q |
213 |
cataatgacttccacggcctctaccgcgaccaccatggtgagcagaagcgaaactcgaataattattgccagaattagaagtagtttgctgaacctgcat |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33765571 |
cataatgacttccacggcctctgccgcgaccaccatggtgagcagaagcgaaactcgaataattattgccagaattagaagtagtttgctgaacctgcat |
33765472 |
T |
|
| Q |
313 |
aatagaagactggtgatcgacagaattatcagtaactgtagaaattaacatctgtcgttcttgttgaagaaccaaggagaagcatcgatcaatatcaggt |
412 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
33765471 |
aatagaagactggtgatcggcagaattatcagtaacagtagaaattaacatctgtcgttcttcttgaaaaaccaaggagaagcatcgatcaatatcaggg |
33765372 |
T |
|
| Q |
413 |
aaag |
416 |
Q |
| |
|
|||| |
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|
| T |
33765371 |
aaag |
33765368 |
T |
|
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