View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9056_low_21 (Length: 430)

Name: NF9056_low_21
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9056_low_21
NF9056_low_21
[»] chr1 (3 HSPs)
chr1 (126-410)||(32181917-32182204)
chr1 (15-100)||(32181807-32181891)
chr1 (357-397)||(7120079-7120119)
[»] chr2 (1 HSPs)
chr2 (344-397)||(28933740-28933793)
[»] chr4 (1 HSPs)
chr4 (357-397)||(32066510-32066550)
[»] chr6 (1 HSPs)
chr6 (346-397)||(31461596-31461647)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 126 - 410
Target Start/End: Original strand, 32181917 - 32182204
Alignment:
Q  126 cagcgtgcagggctttggagaagtgatgaaggagaggaagaagctcataaatttgaaactggaagtagtcaaaatctccactatgctgaggttagttaat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32181917 cagcgtgcagggctttggagaagtgatgaaggagaggaagaagctcataaatttgaaactggaagtagtcaaaatctccactatgctgaggttagttaat 32182016  T
Q  226 tgaggtctttcaagcatctagtagtagtacatttcttatgaatatttcaagcatttcaatattttaaagattcttcactattctgaaatttatgattaat 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32182017 tgaggtctttcaagcatctagtagtagtacatttcttatgaatatttcaagcatttcaatattttaaagattcttcaccattctgaaatttatgattaat 32182116  T
Q  326 ggtttttctta---tagtagtacaagcacttactgtataagtgcatatgtataaactacttatataacaaaagatgtaagtaataagt 410  Q
    | |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32182117 gttttttcttatagtagtagtacaagcacttactgtataagtgcatatgtataaactacttatataacaaaagatgtaagtaataagt 32182204  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 32181807 - 32181891
Alignment:
Q  15 tttggtgttaggaaggtaaagttaatgaatggaaggnnnnnnnnnnctagtattttcaaatttatgtgaggttttgaaattgatga 100  Q
    |||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||    
T  32181807 tttggtgttaggaaggtaaagttaatgaatggaag-aaaaaaaaaactagtattttcaaatttatgtgaggttttgaaattgatga 32181891  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 7120079 - 7120119
Alignment:
Q  357 gtataagtgcatatgtataaactacttatataacaaaagat 397  Q
    |||||||||| ||| ||||||||| ||||||||||||||||    
T  7120079 gtataagtgcttatatataaactatttatataacaaaagat 7120119  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 28933740 - 28933793
Alignment:
Q  344 acaagcacttactgtataagtgcatatgtataaactacttatataacaaaagat 397  Q
    ||||||||||||| |||||||||  |||||||| ||| ||||||||||||||||    
T  28933740 acaagcacttactatataagtgctcatgtataagctatttatataacaaaagat 28933793  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 32066550 - 32066510
Alignment:
Q  357 gtataagtgcatatgtataaactacttatataacaaaagat 397  Q
    |||||||||| |||||||||||||||| |||||||||||||    
T  32066550 gtataagtgcttatgtataaactacttttataacaaaagat 32066510  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 31461596 - 31461647
Alignment:
Q  346 aagcacttactgtataagtgcatatgtataaactacttatataacaaaagat 397  Q
    ||||||||| ||||||||||| ||||||||| ||| || |||||||||||||    
T  31461596 aagcacttattgtataagtgcttatgtataagctatttctataacaaaagat 31461647  T

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