View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9056_low_24 (Length: 426)
Name: NF9056_low_24
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_24 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 42 - 285
Target Start/End: Complemental strand, 14073993 - 14073750
Alignment:
| Q |
42 |
gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgactaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggct |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073993 |
gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgactaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggct |
14073894 |
T |
|
| Q |
142 |
tcagggtgtttttctccactgatgcaactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073893 |
tcagggtgtttttctccactgatgcaactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttga |
14073794 |
T |
|
| Q |
242 |
ttgtcacaggctcaaacatgcccttacgggtgaataaaatgaaa |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14073793 |
ctgtcacaggctcaaacatgctcttacgggtgaataaaatgaaa |
14073750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 42 - 285
Target Start/End: Complemental strand, 14081469 - 14081226
Alignment:
| Q |
42 |
gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgactaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggct |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14081469 |
gagaagctgaaagagatgggtgtggacgaggttatagtgacgggtgtgatgactaacttgtgctgtgaaacaacggcgcgcgaggcctttattagaggct |
14081370 |
T |
|
| Q |
142 |
tcagggtgtttttctccactgatgcaactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttga |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14081369 |
tcagggtgtttttctccactgatgcaactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttga |
14081270 |
T |
|
| Q |
242 |
ttgtcacaggctcaaacatgcccttacgggtgaataaaatgaaa |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14081269 |
ctgtcacaggctcaaacatgctcttacgggtgaataaaatgaaa |
14081226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 89 - 259
Target Start/End: Complemental strand, 14104893 - 14104723
Alignment:
| Q |
89 |
gatgactaacttgtgctgtgagacaacggcgcgcgaggcctttattagaggcttcagggtgtttttctccactgatgcaactgctacctctgatttggat |
188 |
Q |
| |
|
|||||||||| | || |||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
14104893 |
gatgactaacctatgttgtgagacaacggcgcatgagacctttattagaggcttcagggtgttcttctccgctgatgcaagtgctacctctgatttggat |
14104794 |
T |
|
| Q |
189 |
cttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaaca |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14104793 |
cttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgattgtcacaggctcaaaca |
14104723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 123 - 404
Target Start/End: Complemental strand, 11837507 - 11837223
Alignment:
| Q |
123 |
gaggcctttattagaggcttcagggtgtttttctccactgatgcaactgctacctctgatttggatcttcatgaggctacattgaaaaacatggcttatg |
222 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||| | |||| ||| | || |||||| | ||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
11837507 |
gaggcctttatgagaggcttcagggtgttcttctccggtaatgccactaccacatctgatatagattttcatgaggctactttgaaaaacatggtttatg |
11837408 |
T |
|
| Q |
223 |
gttttgcttactttcttgattgtcacaggctcaaacatgcccttacgggtgaataaaatgaaaaactgaac-ttgttataaatatgagtgtgaact--tg |
319 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| ||||||| | ||||||||||||| | ||| ||||||||||| ||| |||||||| | |
|
|
| T |
11837407 |
gttttggttactttcttgattgtcacaggctcagacaagcccttagccttaaataaaatgaaaatttaaacgttgttataaatttgattgtgaacttatt |
11837308 |
T |
|
| Q |
320 |
gtgctgttctgctgtaacagaatttatttgtataacactgcataccttgttatgtgtggtcatgatatcagtc-aaaagaaataat |
404 |
Q |
| |
|
| | |||||||| ||||||||||| | | ||||||| ||||| |||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
11837307 |
ataccgttctgctttaacagaattt-tgttagtaacactatataccctgttatgtgtggacatgctatcagtcaaaaagaaataat |
11837223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 14113051 - 14112985
Alignment:
| Q |
176 |
ctctgatttggatcttcatgaggctacattgaaaaacatggcttatggttttgcttactttcttgat |
242 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
14113051 |
ctctgatttggatcttcataaggctacattgaaaaacttggcttatggttttgcttaatttgttgat |
14112985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 14073744 - 14073695
Alignment:
| Q |
353 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14073744 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
14073695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 402
Target Start/End: Complemental strand, 14081220 - 14081171
Alignment:
| Q |
353 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14081220 |
aacactgcataccttgttatgtgtggtcatgatatcagtcaaaagaaata |
14081171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University