View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_25 (Length: 401)
Name: NF9056_low_25
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 76 - 385
Target Start/End: Complemental strand, 40127110 - 40126803
Alignment:
| Q |
76 |
ttctttattttattcaagacacgttctttcaggaaaggtcagttaatagttaaaccaaacaaccactttttattacgtgtaagagacatcacacacatga |
175 |
Q |
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| T |
40127110 |
ttctttattttattcaagacacgttctttcaggaaaggtcagttaatagttaaaccaaacaaccaatttttattacgtgtaagagacatcacacacatga |
40127011 |
T |
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| Q |
176 |
catttcgaatggtcagattaaagtttacaagtctagttatattaattaaaattgacatctatttacattgttcatgtttataatttgtttcatatattta |
275 |
Q |
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| T |
40127010 |
catttcgaatggtcagattaaagtttacaagtctagttatattaattaaaattgacatctatttacattgttcatgtttataatttgtttcatatattta |
40126911 |
T |
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| Q |
276 |
gcatacctataaatgtgccatgtcannnnnnnnattttggacgtatatgcaacacggattgcatgataagccactgccaccgacgtaatttatttacgtg |
375 |
Q |
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| T |
40126910 |
gcatacctataaatgtgccatgtca--ttttttattttggacgtatatgcaacacggattgcatgataagccactgccaccgacgtaatttatttacgtg |
40126813 |
T |
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| Q |
376 |
ataaggaaag |
385 |
Q |
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|||||||||| |
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| T |
40126812 |
ataaggaaag |
40126803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 40129133 - 40129068
Alignment:
| Q |
16 |
gtgttatacttgtgtggaatgtattttgtttccaagtatttcttgcgactaatatgcatattcttt |
81 |
Q |
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| T |
40129133 |
gtgttatacttgtgtggaatgtgttttgtttccaagtatttcttgcgactaatatgcatattcttt |
40129068 |
T |
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