View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_27 (Length: 389)
Name: NF9056_low_27
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 27561523 - 27561830
Alignment:
| Q |
1 |
taggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaaga |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561523 |
taggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccactcaatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaaga |
27561622 |
T |
|
| Q |
101 |
gctgcatctttccatcgcttcaactgtgcttccatcatccccatttctttagataaagctgaagatatcacacgaaactcagctttgatatcatttctcc |
200 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561623 |
gctgcatctttcgatcgcttcaactgtgtttccatcatccccatttctttagataaagctgaagatatcacacgaaactcagctttgatatcatttctcc |
27561722 |
T |
|
| Q |
201 |
ctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgatatacagaccagtatcctctttggcc |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27561723 |
ctaaaacgtttaatattgtaagaaatgaggagatccaaacgtacacactgcaaatctaaatagagaaaaggtgatatacagaccagtatcctctttggcc |
27561822 |
T |
|
| Q |
301 |
tcttccac |
308 |
Q |
| |
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|||||||| |
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| T |
27561823 |
tcttccac |
27561830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 389
Target Start/End: Original strand, 36668395 - 36668792
Alignment:
| Q |
2 |
aggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaag |
99 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || | |||||||||||| ||||||||| |||||||| | | |
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| T |
36668395 |
aggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaatttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatg |
36668494 |
T |
|
| Q |
100 |
agctgcatctttccatcgcttcaactgtgcttccatcatccccatttctttagataaagctgaagatatcacacgaaactcagctttgatatcatttctc |
199 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
36668495 |
agctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttagataaggctgaagacatcacaccaaactcagctttgatatcttttctc |
36668594 |
T |
|
| Q |
200 |
cctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgatatacagaccagtatcctctttggc |
299 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| | |||||| |
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| T |
36668595 |
cctgaaacatttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaataatgaaaatatgatacacagaccaatatcttgtttggc |
36668694 |
T |
|
| Q |
300 |
ctcttccaccttgatttcaacatcat--------ttaatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaattgtcatggatat |
389 |
Q |
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|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
36668695 |
ctcttccatcttgatttcaagatcattcctttcattaatacacttttgcaactgaatcttgagctcatcagtcctagagtcagaaatgtcatggatat |
36668792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 326
Target Start/End: Complemental strand, 36672887 - 36672630
Alignment:
| Q |
70 |
tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgcttccatcatccccatttcttt-agataaagctgaagat-a |
167 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||||| |||||||||||| ||||||||| |||| ||||||| |||| ||| |||||||||| | ||| | |
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| T |
36672887 |
tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactgatcttctgtcatcccaattttttttagataaagct-atgatca |
36672789 |
T |
|
| Q |
168 |
tcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaa |
267 |
Q |
| |
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||||||| |||||| |||||||| | |||||| | |||| | |||| ||||||||| ||||||| |||||||| ||||| || ||||||||||| || |
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| T |
36672788 |
tcacacgtaactcaactttgatacctattctcctttaaacatgcaatactgtaagaaactaggagattcaaacatagacacttcatatctaaatagataa |
36672689 |
T |
|
| Q |
268 |
aaggtgatatacagaccagtatcctctttggcctcttccaccttgatttcaacatcatt |
326 |
Q |
| |
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|| ||||||| ||||||| |||| | |||||||| ||||| ||| ||||| | |||||| |
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| T |
36672688 |
aatgtgatatgcagaccaatatcttgtttggccttttccatcttaatttccatatcatt |
36672630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 31707837 - 31707919
Alignment:
| Q |
194 |
tttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgata |
276 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
31707837 |
tttctccttgaaacatttaatattgtaagaaatgaggagatccaaacatacacactacaaatctaaatagagaaaatgtgata |
31707919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 300
Target Start/End: Complemental strand, 27563519 - 27563307
Alignment:
| Q |
88 |
tacagctttaagagctgcatctttccatcgcttcaactgtgcttccatcatcccc-atttctttagataaagctgaagat-atcacacgaaactcagctt |
185 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||| ||||||||| |||||||||||||| |||| ||||||||||||| ||||| ||||||| |||||| || |
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| T |
27563519 |
tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct-aagatcatcacacataactcaagtt |
27563421 |
T |
|
| Q |
186 |
tgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgatatacagacca |
285 |
Q |
| |
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|||||| | |||||||||||| | ||||| |||||||| || |||| |||||||||||||| | ||||||||| | |||| ||||||| ||||| | |
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| T |
27563420 |
-gatatcttctctccctgaaacatgcaatatggtaagaaactagaagattcaaacatacacactagacatctaaatacaaaaaatgtgatatgcagacta |
27563322 |
T |
|
| Q |
286 |
gtatcctctttggcc |
300 |
Q |
| |
|
| ||| | ||||||| |
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| T |
27563321 |
gcatcttgtttggcc |
27563307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 29410926 - 29411324
Alignment:
| Q |
1 |
taggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaattt--cgctgaatgaatgtgctttctcacgcaatgctacagctttaa |
98 |
Q |
| |
|
|||| ||||||||||||||||||| | ||| || |||||||||| ||| ||||||| | || | |||||| ||||||||||| |||| |||||||| || |
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|
| T |
29410926 |
taggcgagaaagaaaatgaaagggtactttatgcgaataacctttccactcaatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaa |
29411025 |
T |
|
| Q |
99 |
gagctgcatctttccatcgcttcaactgtgcttccatcatccccatttctttagataaagctgaagatatcacacgaaactcagctttgatatcatttct |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||| |
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| T |
29411026 |
gagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttctttagataaagctgaagccatcacacgaaactcggctttgatgtcttttct |
29411125 |
T |
|
| Q |
199 |
ccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaaaggtgatatacagaccagtatcctctttgg |
298 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||| |||||||||||||||| ||||||| ||||||||||||| ||| || |||||||||||||| ||||| |
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|
| T |
29411126 |
ccctgaaaaatttaacagtgtaagaaacgaggggatccaaacatacacagtgcaaatataaatagagaaaatgtgctacgcagaccagtatcctgtttgg |
29411225 |
T |
|
| Q |
299 |
cctcttccaccttgatttcaacatcatt--------taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaattgtcatggatat |
389 |
Q |
| |
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||||||||| | | ||||||| |||||| |||||||||| ||||| |||| ||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
29411226 |
cctcttccatcgtaatttcaagatcattcttttcaataatacacttctgcaattgaagcttgagctcatcaatcctagagtcagaattgtcatggatat |
29411324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 24202668 - 24202401
Alignment:
| Q |
3 |
ggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaatttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaaga |
100 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| | ||| |||| ||| |
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|
| T |
24202668 |
ggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactcaatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagt |
24202569 |
T |
|
| Q |
101 |
gctgcatctttccatcgcttcaactgtgcttccatcatccccatttctttagataaagctgaagatatcacacgaaactcagctttgatatcatttctcc |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||| || |||||||||||| |||||||||| ||| ||| |
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| T |
24202568 |
gctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctttagataaagttgaagccataacacgaaactcaactttgatatcttttgtcc |
24202469 |
T |
|
| Q |
201 |
ctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatctaaatagagaaa |
268 |
Q |
| |
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||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
24202468 |
ctgaaacatttaatattgtaagaaccaaggagatctaaacatactcactgcaaatctaaatagagaaa |
24202401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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