View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_29 (Length: 374)
Name: NF9056_low_29
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 48835737 - 48835387
Alignment:
| Q |
1 |
gcgcgagaagcttaatcagcggttttatgccttaagagctgttgtaccgaatatttccaagatggacaaggcatctttacttggtgatgctattgcttac |
100 |
Q |
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| T |
48835737 |
gcgcgagaagcttaatcagcggttttatgccttaagagctgttgtaccgaatatttccaagatggacaaggcatctttacttggtgatgctattgcttac |
48835638 |
T |
|
| Q |
101 |
atcaacgagcttcaagcaaaactcaagatcatggagtcagagagagaatcatttggaagcagtacttccagggatggattggccaactcgagatcagaaa |
200 |
Q |
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| T |
48835637 |
atcaacgagcttcaagcaaaactcaagatcatggagtcagagagagaatcatttggaagcagtacttccagggatggattggccaactcgagatcagaaa |
48835538 |
T |
|
| Q |
201 |
atcgtcgtcagaatactagagttcctcctccggatgtggatattcaagcttctcaagatgaggtaatcgtaaaggtgagctgttctcttgatactcatcc |
300 |
Q |
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| T |
48835537 |
atcgtcatcagaatactagagttcctcctccggatgtggatattcaagcttctcaagatgaggtaatcgtaaaggtgagctgttctcttgatactcatcc |
48835438 |
T |
|
| Q |
301 |
tgtttcgaaagtaatcgaaacattcaaagaggcacaaatcagtgttgtaga |
351 |
Q |
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| T |
48835437 |
tgtttcgaaagtaatcgaaacattcaaagaggcacaaatcagtgttgtaga |
48835387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 38660616 - 38660705
Alignment:
| Q |
5 |
gagaagcttaatcagcggttttatgccttaagagctgttgtaccgaatatttccaagatggacaaggcatctttacttggtgatgctatt |
94 |
Q |
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| T |
38660616 |
gagaagcttaaccagagattttacgccttaagagctgttgttcctaacatttctaaaatggacaaggcttctcttcttggcgatgctatt |
38660705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 9804689 - 9804834
Alignment:
| Q |
2 |
cgcgagaagcttaatcagcggttttatgccttaagagctgttgtaccgaatatttccaagatggacaaggcatctttacttggtgatgctattgcttaca |
101 |
Q |
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||||||||||| || ||||| ||||| || ||| |||||||||| ||||||||||||||||||||||| |||||||| | || |||||||||||||||| |
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| T |
9804689 |
cgcgagaagctaaaccagcgtttttacgcattacgagctgttgtgccgaatatttccaagatggacaaagcatctttgttgggagatgctattgcttaca |
9804788 |
T |
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| Q |
102 |
tcaacgagcttcaagcaaaactcaagatcatggagtcagagagaga |
147 |
Q |
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| T |
9804789 |
tcaacgagcttcaagcaaaactcaagaccatggaatctgagagaga |
9804834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 103 - 236
Target Start/End: Complemental strand, 26979330 - 26979199
Alignment:
| Q |
103 |
caacgagcttcaagcaaaactcaagatcatggagtcagagagagaatcatttggaagcagtacttccagggatggattggccaactcgagatcagaaaat |
202 |
Q |
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|||| |||||||||| |||||||||||||| || || |||||||| |||||||||||||| ||| ||| |||||| ||||||||| |||||||||| | |
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| T |
26979330 |
caacaagcttcaagcgaaactcaagatcatagattctgagagaga--catttggaagcagtgctttgaggaatggatcggccaactcaagatcagaaagt |
26979233 |
T |
|
| Q |
203 |
cgtcgtcagaatactagagttcctcctccggatg |
236 |
Q |
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| T |
26979232 |
cgtcatcagactactaaagttcctcctccagatg |
26979199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 26979203 - 26979130
Alignment:
| Q |
256 |
agatgaggtaatcgtaaaggtgagctgttctcttgatactcatcctgtttcgaaagtaatcgaaacattcaaag |
329 |
Q |
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||||||||||| || |||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26979203 |
agatgaggtaactgtcaaggtgagttgttgtcttgatactcatcctgtttctaaagtaatcgaaacattcaaag |
26979130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 9804926 - 9805017
Alignment:
| Q |
239 |
gatattcaagcttctcaagatgaggtaatcgtaaaggtgagctgttctcttgatactcatcctgtttcgaaagtaatcgaaacattcaaaga |
330 |
Q |
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|||||||||||| | ||||||| || |||||||||||||| |||||| ||||| ||||||| |||| ||||| ||| || |||||||||| |
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| T |
9804926 |
gatattcaagctgcacaagatggagttatcgtaaaggtgagttgttctattgatgttcatcctatttcaaaagtcatccaatcattcaaaga |
9805017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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