View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_3 (Length: 839)
Name: NF9056_low_3
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 121 - 498
Target Start/End: Original strand, 10506400 - 10506775
Alignment:
| Q |
121 |
taaacaacattacacaaaagagaagtgttagatatactctctttctaacactcttcaacacatatcttcttattggatcaaacccttgtggttcccccac |
220 |
Q |
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| T |
10506400 |
taaacaacattacacaaaa-agaagtgttacatatactctctttctaacactcttcaacacatatattcttattggatcaaacccttgtagttcccacac |
10506498 |
T |
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| Q |
221 |
tttagaaatgattcacacataaagtggtgagttacatagatttgacgctcctagcatttctcttgcacacagaaatatcggtgacatgttcttcatcgtt |
320 |
Q |
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| T |
10506499 |
tttagaaatgattcacacataaagtggtgagttacatagattt-acgctcctagcatttctcttgcacacagaaatacaggtgacatgttcttcatcgtt |
10506597 |
T |
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| Q |
321 |
tattgattctcaccctaggtagcactagcagcactgtgtttgtatcactaaaggatgtcatgctctagccaaacacgtcatagccacaacatgagtccaa |
420 |
Q |
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| T |
10506598 |
tgttgattctcaccctgggtagcactagcagcactgtgtttgtatcactaaaggatgtcatgctctagccaaacacgtcatagccacaacatgagtccaa |
10506697 |
T |
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| Q |
421 |
aaaattatgnnnnnnntgtcatacaatctaccacggtgatttgttaggatgcatttcattggtgacttgtttgacctc |
498 |
Q |
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| T |
10506698 |
aaaattatgaaaaaaatgtcatacaatctaccacggtgatttgttaggatgcatttgattggtaacttgtttgacctc |
10506775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 551 - 821
Target Start/End: Original strand, 10507071 - 10507338
Alignment:
| Q |
551 |
taaagtccgtagcatccacgataaactgaacctcactaaacaaaagaataataattacacacgatacccactcaaacaccaaaaaagcataatctttgaa |
650 |
Q |
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| T |
10507071 |
taaagtccgtggaatccacgataaactaaacctcactaaacaaaagaataataattacacacgatacccattcaaacaccaaaaaagcataatctttgaa |
10507170 |
T |
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| Q |
651 |
ttcatacatgatattattttgatttccctatcaagtttagtattaaataataatcatatttggctataaattcaagttattgataaacatagtatgatca |
750 |
Q |
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| T |
10507171 |
ttcatacatgatattattttgatttccctatcaagtttagtattaaataataatcatatttggctataaattcaagttcttgataaacatagtatgatca |
10507270 |
T |
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| Q |
751 |
tcatataatataagtccataggttcctttattgcttcatgaaattattcatggcaaaaattgagctctcta |
821 |
Q |
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| T |
10507271 |
tcatataatataagtccataggttcctttattgcttcatgaa---attcatggcaaaaattgagctctcta |
10507338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 10501740 - 10501788
Alignment:
| Q |
375 |
atgtcatgctctagccaaacacgtcatagccacaacatgagtccaaaaa |
423 |
Q |
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| T |
10501740 |
atgtcatgctctagccaaacacgtcatggccataacatgtgtccaaaaa |
10501788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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