View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9056_low_34 (Length: 347)

Name: NF9056_low_34
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9056_low_34
NF9056_low_34
[»] chr3 (21 HSPs)
chr3 (73-333)||(11506940-11507197)
chr3 (1-75)||(13845465-13845539)
chr3 (1-76)||(40993274-40993349)
chr3 (1-75)||(35222983-35223057)
chr3 (4-75)||(20503513-20503584)
chr3 (4-75)||(55401123-55401194)
chr3 (4-76)||(7171549-7171621)
chr3 (4-73)||(28918049-28918120)
chr3 (4-76)||(41961578-41961650)
chr3 (1-56)||(2941603-2941658)
chr3 (4-73)||(4987222-4987291)
chr3 (1-74)||(8789489-8789564)
chr3 (4-60)||(10955000-10955056)
chr3 (4-75)||(25064966-25065037)
chr3 (14-76)||(49651715-49651777)
chr3 (39-76)||(5407198-5407235)
chr3 (10-74)||(15864886-15864950)
chr3 (17-74)||(15999951-16000008)
chr3 (4-76)||(14209172-14209244)
chr3 (9-73)||(29508503-29508567)
chr3 (11-75)||(34185052-34185116)
[»] chr2 (23 HSPs)
chr2 (1-75)||(24009340-24009414)
chr2 (4-75)||(34784911-34784982)
chr2 (4-75)||(36096304-36096375)
chr2 (1-76)||(20242666-20242741)
chr2 (4-73)||(2438661-2438730)
chr2 (5-73)||(19942314-19942382)
chr2 (5-75)||(26769571-26769641)
chr2 (4-76)||(37419802-37419874)
chr2 (1-56)||(5367237-5367292)
chr2 (4-75)||(18840953-18841024)
chr2 (4-75)||(30717459-30717530)
chr2 (4-75)||(35056927-35056998)
chr2 (9-75)||(11223793-11223858)
chr2 (4-62)||(12224271-12224329)
chr2 (4-74)||(28596517-28596587)
chr2 (10-75)||(41843500-41843565)
chr2 (19-75)||(18054716-18054772)
chr2 (1-76)||(34993921-34993996)
chr2 (4-75)||(38117099-38117170)
chr2 (4-77)||(15972921-15972994)
chr2 (39-76)||(19536360-19536397)
chr2 (10-75)||(42511322-42511387)
chr2 (4-64)||(5040782-5040842)
[»] chr8 (20 HSPs)
chr8 (4-75)||(34450961-34451032)
chr8 (1-74)||(43737752-43737825)
chr8 (1-75)||(3951476-3951550)
chr8 (10-75)||(26902104-26902169)
chr8 (1-75)||(33405324-33405398)
chr8 (5-74)||(29447040-29447109)
chr8 (4-76)||(29510232-29510304)
chr8 (4-75)||(15816058-15816129)
chr8 (4-75)||(18964238-18964309)
chr8 (4-75)||(22652035-22652106)
chr8 (4-73)||(926730-926799)
chr8 (4-73)||(3025599-3025668)
chr8 (11-76)||(4673353-4673418)
chr8 (4-73)||(20679337-20679406)
chr8 (4-76)||(5813640-5813712)
chr8 (1-75)||(17751700-17751775)
chr8 (1-75)||(17760687-17760762)
chr8 (4-75)||(28745557-28745628)
chr8 (10-80)||(8343381-8343451)
chr8 (11-75)||(6065586-6065650)
[»] chr6 (24 HSPs)
chr6 (4-76)||(18367895-18367967)
chr6 (4-75)||(16488519-16488590)
chr6 (4-75)||(34595182-34595253)
chr6 (10-76)||(17327589-17327655)
chr6 (4-76)||(10339053-10339125)
chr6 (4-72)||(32978842-32978910)
chr6 (10-73)||(12696383-12696446)
chr6 (4-76)||(4877991-4878062)
chr6 (4-76)||(8365447-8365519)
chr6 (4-75)||(28152146-28152217)
chr6 (10-74)||(31384984-31385048)
chr6 (27-75)||(34446642-34446690)
chr6 (4-75)||(5970037-5970108)
chr6 (4-75)||(8714039-8714110)
chr6 (4-75)||(16766756-16766827)
chr6 (1-76)||(33001228-33001303)
chr6 (1-75)||(7378024-7378098)
chr6 (5-74)||(9658928-9658998)
chr6 (8-74)||(17841530-17841596)
chr6 (39-76)||(10649371-10649408)
chr6 (39-75)||(5732474-5732510)
chr6 (20-72)||(7996325-7996377)
chr6 (20-72)||(8022424-8022476)
chr6 (4-76)||(28715343-28715415)
[»] chr1 (27 HSPs)
chr1 (4-76)||(25934675-25934747)
chr1 (1-74)||(10577676-10577749)
chr1 (3-75)||(32461393-32461465)
chr1 (3-75)||(41597410-41597482)
chr1 (4-75)||(22515827-22515898)
chr1 (4-75)||(47989556-47989627)
chr1 (4-74)||(40258874-40258944)
chr1 (4-77)||(37598879-37598952)
chr1 (4-76)||(51410073-51410145)
chr1 (1-74)||(12918990-12919063)
chr1 (4-76)||(40917808-40917880)
chr1 (4-75)||(18337377-18337448)
chr1 (4-75)||(46348323-46348394)
chr1 (1-75)||(30749885-30749959)
chr1 (1-75)||(30771336-30771410)
chr1 (30-75)||(27965940-27965985)
chr1 (4-77)||(31694637-31694710)
chr1 (4-76)||(9828103-9828175)
chr1 (10-73)||(1486646-1486709)
chr1 (40-75)||(1704935-1704970)
chr1 (8-75)||(18556385-18556452)
chr1 (32-75)||(36878542-36878585)
chr1 (10-76)||(31015091-31015157)
chr1 (4-73)||(42359391-42359460)
chr1 (4-76)||(1815305-1815377)
chr1 (12-76)||(6427531-6427595)
chr1 (1-45)||(29163351-29163395)
[»] chr7 (16 HSPs)
chr7 (1-75)||(18212973-18213047)
chr7 (4-75)||(24339701-24339772)
chr7 (10-76)||(5409770-5409836)
chr7 (10-76)||(9778559-9778625)
chr7 (4-75)||(598256-598327)
chr7 (4-75)||(21880200-21880271)
chr7 (1-74)||(32287404-32287477)
chr7 (4-76)||(15680857-15680929)
chr7 (5-53)||(39138493-39138541)
chr7 (10-75)||(32093954-32094020)
chr7 (1-74)||(20549836-20549909)
chr7 (10-75)||(43027404-43027469)
chr7 (32-72)||(8842282-8842322)
chr7 (7-75)||(25822717-25822785)
chr7 (4-76)||(33994260-33994332)
chr7 (32-76)||(35862027-35862071)
[»] chr5 (20 HSPs)
chr5 (4-74)||(6401557-6401627)
chr5 (1-71)||(30098982-30099052)
chr5 (4-75)||(21814320-21814391)
chr5 (4-76)||(28588613-28588685)
chr5 (4-75)||(21576685-21576756)
chr5 (4-75)||(39698600-39698671)
chr5 (1-75)||(42029797-42029871)
chr5 (1-73)||(30502330-30502402)
chr5 (1-73)||(30542673-30542745)
chr5 (4-75)||(21522809-21522880)
chr5 (4-75)||(21533375-21533446)
chr5 (1-72)||(39268541-39268612)
chr5 (4-74)||(21542089-21542159)
chr5 (11-72)||(19452998-19453059)
chr5 (4-73)||(21190998-21191067)
chr5 (4-76)||(43564929-43565001)
chr5 (4-63)||(15382533-15382592)
chr5 (41-76)||(39758345-39758380)
chr5 (5-75)||(17123097-17123166)
chr5 (10-75)||(31084382-31084447)
[»] chr4 (22 HSPs)
chr4 (4-75)||(5414101-5414172)
chr4 (4-75)||(28964188-28964259)
chr4 (4-75)||(23292926-23292997)
chr4 (4-75)||(49431074-49431145)
chr4 (4-75)||(46083920-46083991)
chr4 (4-74)||(30982808-30982878)
chr4 (4-76)||(16073442-16073514)
chr4 (4-75)||(12895214-12895285)
chr4 (5-76)||(24613629-24613700)
chr4 (4-74)||(12323968-12324038)
chr4 (5-75)||(19097835-19097904)
chr4 (4-76)||(53381529-53381602)
chr4 (4-76)||(19500786-19500858)
chr4 (12-75)||(32273461-32273524)
chr4 (17-75)||(715545-715603)
chr4 (17-75)||(752871-752929)
chr4 (5-75)||(8423658-8423728)
chr4 (4-73)||(4157484-4157553)
chr4 (10-74)||(3947702-3947766)
chr4 (41-73)||(7424742-7424774)
chr4 (4-76)||(19482727-19482799)
chr4 (15-75)||(29205527-29205587)
[»] scaffold0623 (1 HSPs)
scaffold0623 (7-74)||(5926-5993)
[»] scaffold0306 (1 HSPs)
scaffold0306 (4-73)||(13454-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (4-73)||(21804-21873)
[»] scaffold0003 (1 HSPs)
scaffold0003 (4-75)||(241653-241724)
[»] scaffold0652 (1 HSPs)
scaffold0652 (4-74)||(403-473)
[»] scaffold0136 (1 HSPs)
scaffold0136 (4-77)||(3776-3849)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-74)||(92875-92940)
[»] scaffold0380 (1 HSPs)
scaffold0380 (4-76)||(8649-8721)
[»] scaffold0019 (1 HSPs)
scaffold0019 (4-76)||(71784-71856)
[»] scaffold0083 (1 HSPs)
scaffold0083 (4-75)||(45470-45541)
[»] scaffold0053 (1 HSPs)
scaffold0053 (4-75)||(8846-8917)
[»] scaffold0793 (1 HSPs)
scaffold0793 (17-75)||(4821-4879)
[»] scaffold0361 (1 HSPs)
scaffold0361 (9-75)||(14580-14646)
[»] scaffold0227 (1 HSPs)
scaffold0227 (30-75)||(15045-15090)
[»] scaffold0475 (1 HSPs)
scaffold0475 (32-76)||(3384-3428)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 73 - 333
Target Start/End: Complemental strand, 11507197 - 11506940
Alignment:
Q  73 taggggagcttatatagcttataagtacacgaactctgattcaattatgattgactgtcttgcaatattcaaagaacgttgttgctaccaatcattaaaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||    
T  11507197 taggggagcttatatagcttataagtacacgaactctgattcaattatgattgactgtcttgcaatattcaaagaacattg---ctaccaatcattaaaa 11507101  T
Q  173 tccaatgtaaagcaaatatgttttaactatgagtataggaactctggttcgtcttgtgagcccgtagggtatgggtcgggtctaggcctaacccaaagaa 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11507100 tccaatgtaaagcaaatatgttttaactatgagtataggaactctggttcgtcttgtgagcccgtagggtatgggtcgggtcaaggcctaacccaaagaa 11507001  T
Q  273 aattgggacagaatgatattccaggacctgaccagatggaaggagggtctgggtttacaat 333  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11507000 aattgggacagaatgatattccaggatctgaccagatggaaggagggtctgggtttacaat 11506940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13845539 - 13845465
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| || | |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  13845539 tatgtgtcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40993349 - 40993274
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||||||||||||||| | || ||||| ||||||||||| |||| ||||||||||||||||||||||    
T  40993349 tatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatagg 40993274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35222983 - 35223057
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||||||| ||||||||||    
T  35222983 tatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatag 35223057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 20503513 - 20503584
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||| ||||||||||| | |||||||| ||||||||||| |||| |||||||||| ||||||||||    
T  20503513 gtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 55401123 - 55401194
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||| | ||||||||| |||| |||||||||| ||||||||||    
T  55401123 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 7171549 - 7171621
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||| ||||||||||||||||| | || ||||| | ||||||||| |||||||||||||  ||||||||||||    
T  7171549 gtgttggtgtcggacacgacacgtgtccgacaccgcgacacgcctaatccaaggagtgtatatgcttcatagg 7171621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 28918049 - 28918120
Alignment:
Q  4 gtgtcggtgtcg--gacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||  |||||||||| | || ||||| ||||||||||| ||||||||||||||| ||||||||    
T  28918049 gtgtcggtgtcgtggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 41961650 - 41961578
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||| ||||||||||||| | || ||||| ||||||||||| |||| || ||||||| |||||||||||    
T  41961650 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatagg 41961578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2941603 - 2941658
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaag 56  Q
    ||||||||||||||||||||||||| | ||||||| ||||| | ||||||||||||    
T  2941603 tatgtgtcggtgtcggacacgacacgtgtctgacatggggatatgccttatccaag 2941658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 4987291 - 4987222
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||| ||||||||||| | || ||||| ||||||||||| |||| |||||||||| | ||||||    
T  4987291 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8789564 - 8789489
Alignment:
Q  1 tatgtgtcggtgtcggacacg--acacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||||||||  |||| | || ||||| | ||||||||| |||| |||||||||| |||||||||    
T  8789564 tatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 10955000 - 10955056
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagt 60  Q
    |||||||||||||||||||||| | || ||||| ||||||||||| |||| ||||||    
T  10955000 gtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatccgaggagt 10955056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 25064966 - 25065037
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||| ||||||||||||||||| | |||||||| ||||||||  |||||| |||||||| | |||| |||||    
T  25064966 gtgttggtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttcgtgctccatag 25065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 49651777 - 49651715
Alignment:
Q  14 cggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||| |||| ||||| ||||||| ||| |||| || ||||||| |||||||||||    
T  49651777 cggacacgacacatatccgacaccgggacacacctaatccgagaagtgtccgtgcttcatagg 49651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 5407235 - 5407198
Alignment:
Q  39 ggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  5407235 ggacacgcctaatccaaagagtgtccatgcttcatagg 5407198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 15864886 - 15864950
Alignment:
Q  10 gtgtcggacac-gacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||| ||||| | ||||||||||| |||||||| |||||| |||||||| |||||||||    
T  15864886 gtgtcggacaccgacacgtgtctgacacggg-acacgcctaatccaaagagtgtccgtgcttcata 15864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 16000008 - 15999951
Alignment:
Q  17 acacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||| | || ||||| ||||||||||| ||||||||||||||| ||| |||||    
T  16000008 acacgacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcata 15999951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 14209172 - 14209244
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | |  ||||  |||| || ||| ||||||| ||||||| |||||||||||    
T  14209172 gtgtcggtgtcggacacgacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcatagg 14209244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 29508503 - 29508567
Alignment:
Q  9 ggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||||||||||   || ||||| |||||||| || ||||||| ||||||| ||||||||    
T  29508503 ggtgtcggacacgacacacgtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 34185116 - 34185052
Alignment:
Q  11 tgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| ||||  | || ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  34185116 tgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24009340 - 24009414
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  24009340 tatgtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 24009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 34784982 - 34784911
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||||  ||||||||||    
T  34784982 gtgtcggtatcggacacgacacctgtctgacacggggacacgccttattcgaggagtgtctgtgcttcatag 34784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 36096375 - 36096304
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||| ||||||||||||||| | |||||||||||||||||||||| |||| |||||||| ||||||||||    
T  36096375 gtgtcgatgtcggacacgacacgtgtctgacacggggacacgccttaaccaaagagtgtccgtgcttcatag 36096304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 20242741 - 20242666
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||| |||| | ||||||||| ||||||||||||||| | |||||||  |||||||||||    
T  20242741 tatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcatagg 20242666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||||||||||||||| | || ||||| ||||||||||| |||| |||||||||| ||||||||    
T  2438730 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 19942314 - 19942382
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||||| ||  | |||||||| ||||||||||| |||| |||||||||||||||||||    
T  19942314 tgtcggtgtcggacacggcatgtgtctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 26769571 - 26769641
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||| ||||||||||||| | || ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  26769571 tgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 37419802 - 37419874
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||  | | || ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  37419802 gtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 37419874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5367237 - 5367292
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaag 56  Q
    ||||||||||||||||||||||||| |||| ||| | ||||||||||| |||||||    
T  5367237 tatgtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatccaag 5367292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 18841024 - 18840953
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||| |||||||||| | || ||||| ||||||| ||| |||| |||||||||| ||||||||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 30717530 - 30717459
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||| ||||||||||||||| | |  ||||| |||| |||||| ||||||||||||||| ||||||||||    
T  30717530 gtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 30717459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 35056927 - 35056998
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || |||||||  |||||||| |||  |||||||||| ||||||||||    
T  35056927 gtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 11223858 - 11223793
Alignment:
Q  9 ggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||| | |||||||| ||||||||||| |||  |||||||||| ||||||||||    
T  11223858 ggtgtcggacacgacac-tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 12224271 - 12224329
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgt 62  Q
    ||||||||||||||||||| || | || ||||| ||||||||||| |||||||||||||    
T  12224271 gtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtgt 12224329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 28596517 - 28596587
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||||||||| | || |||||  |||||| ||| |||| |||||||||| |||||||||    
T  28596517 gtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 41843500 - 41843565
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| |||||| | || ||||||||||||||| |||||| |||||||||  ||||||||||    
T  41843500 gtgtcggacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcatag 41843565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 18054772 - 18054716
Alignment:
Q  19 acgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||| | ||||||||||  |||||||||||||||||| ||||| ||||||||||    
T  18054772 acgacacgtgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcatag 18054716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 34993996 - 34993921
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||| |||||| ||||||||  | || ||||| ||||||||||| || |||||||||| | |||||||||||    
T  34993996 tatgtgtcagtgtcgaacacgacatgtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatagg 34993921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 38117170 - 38117099
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||| |||||||||||| |||| | || ||||| ||||||||||| |||| ||| |||||| ||||||||||    
T  38117170 gtgttggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 15972921 - 15972994
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcataggg 77  Q
    |||||||||||||||||||||| | || ||| | ||||||| ||| |||| | || ||||| ||||||||||||    
T  15972921 gtgtcggtgtcggacacgacacgtgtccgacgccgggacacacctaatccgaagaatgtccgtgcttcataggg 15972994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 19536397 - 19536360
Alignment:
Q  39 ggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  19536397 ggacacgcctaatccgaggagtgtccatgcttcatagg 19536360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 42511387 - 42511322
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||| |||| | || ||||| |||||||| || |||| |||||||||| ||||||||||    
T  42511387 gtgtcggacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 5040782 - 5040842
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtcc 64  Q
    |||||||||||||||||||||  | || ||| | |||||||||||  ||||||||||||||    
T  5040782 gtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctagtccaaggagtgtcc 5040842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 34451032 - 34450961
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||    
T  34451032 gtgtcggtgtcggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 34450961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 43737825 - 43737752
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||| |||||||||    
T  43737825 tatgtgtcggtgtcggacacgacaggtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3951550 - 3951476
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||| |||||||||| | ||||||||||| |||||||| ||||||||||| ||| ||||||||||    
T  3951550 tatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 26902169 - 26902104
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||| | |||| |||||||||||||||||||  |||||||||| ||||||||||    
T  26902169 gtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtgtccgtgcttcatag 26902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 33405398 - 33405324
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||| || |||||| |||||||| |||| |||||    
T  33405398 tatgtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgctccatag 33405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 29447109 - 29447040
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||||||||||||  | ||||||||  |||||||||| |||| |||||||||| |||||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 29510304 - 29510232
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||| | | || ||||| ||||||| ||| |||| |||||||||| |||||||||||    
T  29510304 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 29510232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 15816129 - 15816058
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||| |||||||||||||||||  ||| ||||| ||||||||||| |||| || ||||||| ||||||||||    
T  15816129 gtgttggtgtcggacacgacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 18964238 - 18964309
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||| || | ||||||||||| ||| |||||| |||||||||||||| |||||||||  ||||||||||    
T  18964238 gtgtcggcgttgaacacgacacctgtctaacacggagacacgccttatccgaggagtgtctgtgcttcatag 18964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 22652035 - 22652106
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||  | || ||||| |||||||| || |||| |||||||||| ||||||||||    
T  22652035 gtgtcggtgtcggacacgacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 926799 - 926730
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||| |||||| | || ||||| |||||| || |||||| |||||||||| ||||||||    
T  926799 gtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 3025599 - 3025668
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||| |||||||||||||||| | |||||||| | |||||| || |||| |||||||||| ||||||||    
T  3025599 gtgtcagtgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 4673418 - 4673353
Alignment:
Q  11 tgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||| | |||| ||||| || |||||||| ||||||||||||||  |||||||||||    
T  4673418 tgtcggacacgacgcatatccgacaccggaacacgcctaatccaaggagtgtctgtgcttcatagg 4673353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 20679406 - 20679337
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||| ||| | |||| | || ||||| ||||||||||||| || |||||||||||||||||||    
T  20679406 gtgtcggtgtcagacgcaacacgtgtccgacaccgggacacgccttaaccgaggagtgtccatgcttcat 20679337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 5813640 - 5813712
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | || ||||| ||||||||||| ||   |||||||||| |||||| ||||    
T  5813640 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttcgtagg 5813712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17751700 - 17751775
Alignment:
Q  1 tatgtgtcggtgtcggacac-gacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||| ||| | || | ||||| ||||||||||| |||| ||||||||||  |||||||||    
T  17751700 tatgtgtcggtgtcggacacagacgcatagccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17751775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17760687 - 17760762
Alignment:
Q  1 tatgtgtcggtgtcggacac-gacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||| ||| | || | ||||| ||||||||||| |||| ||||||||||  |||||||||    
T  17760687 tatgtgtcggtgtcggacacagacgcatagccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 28745557 - 28745628
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||||| || | ||| | |||| | || || |||||||||||| ||||||||||    
T  28745557 gtgtcggtgtcggacacgacacctgtccgtcaccgagacaagtctaattcaaggagtgtccgtgcttcatag 28745628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 8343381 - 8343451
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcataggggag 80  Q
    ||||| |||||||||| | || ||||| ||||||||||| |||| | |||||||  |||||||||||||||    
T  8343381 gtgtccgacacgacacgtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcataggggag 8343451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 6065650 - 6065586
Alignment:
Q  11 tgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||| | || ||||| || |||||| | || |||||||||||| ||||||||||    
T  6065650 tgtcggacacgacacatgtccgacaccggaacacgcataattcaaggagtgtccgtgcttcatag 6065586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 18367895 - 18367967
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  18367895 gtgtcggtgtcagacacgacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatagg 18367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 16488590 - 16488519
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||| | ||||||||||    
T  16488590 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttcatag 16488519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 34595182 - 34595253
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | |||||||| ||||||| ||| |||| |||||||||| ||||||||||    
T  34595182 gtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 17327655 - 17327589
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||| | |||||||| ||||||||||| |||| |||||||||| |||||||||||    
T  17327655 gtgtcggacacgacacgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatagg 17327589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 10339125 - 10339053
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | || ||||| ||||||||||| |||  |||||||||| |||||||||||    
T  10339125 gtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatagg 10339053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 32978910 - 32978842
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttca 72  Q
    |||||||||||||||||||||| | || ||||| |||||||| || ||||||||||||||| |||||||    
T  32978910 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 12696383 - 12696446
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||||||||| | |||||||| ||||||| ||||||||||||||||||  ||||||||    
T  12696383 gtgtcggacacgacacgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 4877991 - 4878062
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | || ||||| || |||||||| |||| |||||||||| |||||||||||    
T  4877991 gtgtcggtgtcggacacgacacatgtccgacacagg-acacgcctaatccgaggagtgtccgtgcttcatagg 4878062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 8365519 - 8365447
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||| ||||||||||||| | || ||||| ||||||||||| |||| |||||| ||| |||||||||||    
T  8365519 gtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatagg 8365447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 28152146 - 28152217
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||| |||||| |||| |||| |||||||| | ||||||||||    
T  28152146 gtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 31384984 - 31385048
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||| ||||||||||| | ||  |||| ||||||||||| ||||||||||||||| |||||||||    
T  31384984 gtgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtccgtgcttcata 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 34446642 - 34446690
Alignment:
Q  27 tatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||||||    
T  34446642 tatctgacactgggacacacctaatccaaggagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 5970108 - 5970037
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||  ||||||||||  |||| ||||||| | |||||||||||    
T  5970108 gtgtcggtgtcggacacgacacatttccgacatcgggacacgcccaatccgaggagtgactatgcttcatag 5970037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 8714039 - 8714110
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||  ||||||||||  |||| |||||||||  ||||||||||    
T  8714039 gtgtcggtgtcggacacgacacatttccgacatcgggacacgcccaatccgaggagtgtctttgcttcatag 8714110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 16766756 - 16766827
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||| |||| | || ||||| ||||||||||| |||| | || ||||| ||||||||||    
T  16766756 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33001303 - 33001228
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||||||||||||||| | |||||||| |  | |||||| |||||| ||||||   |||||||||||    
T  33001303 tatgtgtcggtgtcggacacgacacgtgtctgacaccgaaatacgcctaatccaaagagtgtttgtgcttcatagg 33001228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7378024 - 7378098
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||||||||||   ||| ||||| |||||||| || |||  || ||||||| ||||||||||    
T  7378024 tatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 9658928 - 9658998
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttat-ccaaggagtgtccatgcttcata 74  Q
    |||||||||  |||||||||| | |||||||| || |||||||| || ||||||||||||| |||||||||    
T  9658928 tgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttcata 9658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 17841596 - 17841530
Alignment:
Q  8 cggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||||  | || ||||| | ||||||||| |||| |||||||||| |||||||||    
T  17841596 cggtgtcggacacgacatgtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 10649371 - 10649408
Alignment:
Q  39 ggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  10649371 ggacacgcctaatccaaggagtgtccgtgcttcatagg 10649408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 5732510 - 5732474
Alignment:
Q  39 ggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||| |||| |||||||||||||||||||||    
T  5732510 ggacacgcctaatccgaggagtgtccatgcttcatag 5732474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 7996377 - 7996325
Alignment:
Q  20 cgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttca 72  Q
    |||||| | ||| |||||||||||||||| ||||||||||| ||| |||||||    
T  7996377 cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 7996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 8022424 - 8022476
Alignment:
Q  20 cgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttca 72  Q
    |||||| | ||| |||||||||||||||| ||||||||||| ||| |||||||    
T  8022424 cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 8022476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 28715343 - 28715415
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | |  ||||| ||||||||||| || | || ||||| | |||||||||||    
T  28715343 gtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatagg 28715415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 25934675 - 25934747
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  25934675 gtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatagg 25934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10577749 - 10577676
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||| | |||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||    
T  10577749 tatgtgtcgggggcggacacgacgcgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 10577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 32461465 - 32461393
Alignment:
Q  3 tgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 41597482 - 41597410
Alignment:
Q  3 tgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||| |||||||||||||||| | ||||||||||||| |||| ||||||||||||||||  ||||||||||    
T  41597482 tgtgtccgtgtcggacacgacacgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcatag 41597410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 22515898 - 22515827
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||||||||| ||||||||||    
T  22515898 gtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 47989556 - 47989627
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | |||||||  ||||||||||| |||| |||||||||| ||||||||||    
T  47989556 gtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 40258944 - 40258874
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||| |||||||||||| || |||||  |||||||||| |||| ||||||||||||||||||||    
T  40258944 gtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 37598879 - 37598952
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcataggg 77  Q
    |||||||||||||||||||||| | || ||||  ||||||||||| |||| |||||||||| ||||||||||||    
T  37598879 gtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcataggg 37598952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 51410073 - 51410145
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| |||| ||||| | ||||||||| ||||||||||| | | |||||||||||    
T  51410073 gtgtcggtgtcggacacgacacgtatccgacaccgagacacgcctaatccaaggagtattcgtgcttcatagg 51410145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12918990 - 12919063
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||| ||| ||||||||||||| | ||||||||||||||||| ||||||| || ||||| | |||||||||    
T  12918990 tatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 40917808 - 40917880
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||| ||||||||||| | || ||||| ||||||||||| |||| |||| ||||| |||||||||||    
T  40917808 gtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatagg 40917880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 18337377 - 18337448
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||| |||| | || ||||| |||||| |||| |||| |||||||||| ||||||||||    
T  18337377 gtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 46348394 - 46348323
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||| | ||||||||| |||| ||| |||||| ||||||||||    
T  46348394 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30749885 - 30749959
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||| |||  | | ||||||| ||| |||| |||| | |||||||||||||||||||||    
T  30749885 tatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcatag 30749959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30771336 - 30771410
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||| |||  | | ||||||| ||| |||| |||| | |||||||||||||||||||||    
T  30771336 tatgtgtcggtgtcggacaccacatgtgtttgacacgaggatacgcattattcgaggagtgtccatgcttcatag 30771410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 27965985 - 27965940
Alignment:
Q  30 ctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||| ||||||||||| |||| |||||||||||||||||||||    
T  27965985 ctgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 27965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 31694710 - 31694637
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcataggg 77  Q
    ||||||||||||||||| |||| |||  ||||| || |||||||| |||  |||||||||| ||||||||||||    
T  31694710 gtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttcataggg 31694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 9828103 - 9828175
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||| ||||| |||||||||| | || ||||| |||||||| || |||| |||||||||| |||||||||||    
T  9828103 gtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatagg 9828175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 1486709 - 1486646
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||||||||| | || ||||| ||||||||||| |||| |||||||||  ||||||||    
T  1486709 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 1704970 - 1704935
Alignment:
Q  40 gacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1704970 gacacgcctaatccaaggagtgtccatgcttcatag 1704935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 18556452 - 18556385
Alignment:
Q  8 cggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||| ||| |||||| |||| ||||| ||||||||||| |||| || ||||||| ||||||||||    
T  18556452 cggtgtcagacccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 36878542 - 36878585
Alignment:
Q  32 gacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||    
T  36878542 gacacggggacacgcctaatcccaggagtgtccgtgcttcatag 36878585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 31015091 - 31015157
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||| | |||||||  ||||||||||| ||||||||||  ||  |||||||||||    
T  31015091 gtgtcggacacgacacgtgtctgacatcgggacacgcctaatccaaggaggatcagtgcttcatagg 31015157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 42359460 - 42359391
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||||||||| |||   | || ||||| ||||||||||| |||| |||||||||| ||||||||    
T  42359460 gtgtcggtgtcggacaagacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 1815305 - 1815377
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||| |||||||||| | || ||||| ||||||||||| |||  ||||||| || || ||||||||    
T  1815305 gtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatagg 1815377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 6427531 - 6427595
Alignment:
Q  12 gtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||| | || ||||| ||||||||||| |||  | |||||||| |||||||||||    
T  6427531 gtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagg 6427595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29163395 - 29163351
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacg 45  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||||    
T  29163395 tatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacg 29163351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 18213047 - 18212973
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||  ||||||||||    
T  18213047 tatgtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 24339701 - 24339772
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| |||| ||||| ||||||||||| |||| ||||||| || ||||||||||    
T  24339701 gtgtcggtgtcggacacgacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 5409836 - 5409770
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||| | || ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  5409836 gtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 5409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 9778559 - 9778625
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||| |||| | || ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  9778559 gtgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatagg 9778625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 598256 - 598327
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||| |||||||||| | || ||||| ||||||||||| |||| || ||||||| ||||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21880200 - 21880271
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || |||||  |||||||||| |||| || ||||||| ||||||||||    
T  21880200 gtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 32287477 - 32287404
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||||||||||| ||||  | || ||||| ||||||| ||| |||| |||||||||| |||||||||    
T  32287477 tatgtgtcggtgtcggacatgacaagtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 15680857 - 15680929
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| | || ||||| | |||||| || || | |||||||||| |||||||||||    
T  15680857 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatagg 15680929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39138493 - 39138541
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatcc 53  Q
    |||||||||||||||||| || | ||| |||||||||||||||||||||    
T  39138493 tgtcggtgtcggacacgatacatgtctaacacggggacacgccttatcc 39138541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 32094020 - 32093954
Alignment:
Q  10 gtgtcggacacgacacctatctgacac-ggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||| | || ||||| |||||||||||| |||| |||||||| | ||||||||||    
T  32094020 gtgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatag 32093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20549836 - 20549909
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||||||| |||| | || ||||  | ||||||||| |||| ||||||| || |||||||||    
T  20549836 tatgtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 43027469 - 43027404
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||| |||||||||| | || ||||| ||||||||||| |||| | |||||||| ||||||||||    
T  43027469 gtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 8842322 - 8842282
Alignment:
Q  32 gacacggggacacgccttatccaaggagtgtccatgcttca 72  Q
    ||||| ||||||||||| ||||||||||||||| |||||||    
T  8842322 gacaccgggacacgcctaatccaaggagtgtccgtgcttca 8842282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 25822717 - 25822785
Alignment:
Q  7 tcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||| ||||||||||||| | |||||||  |||||| |||| ||| ||||||||||| || |||||||    
T  25822717 tcggtatcggacacgacacgtgtctgacatcgggacatgcctaatctaaggagtgtccgtgtttcatag 25822785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 33994260 - 33994332
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||| |||||||||| | ||  |||| | ||||||||| ||||||||||||| | || ||||||||    
T  33994260 gtgtcggtgtcagacacgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcatagg 33994332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 35862027 - 35862071
Alignment:
Q  32 gacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||| |||||||||| |||| |||||||||| |||||||||||    
T  35862027 gacacgaggacacgcctaatccgaggagtgtccgtgcttcatagg 35862071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 6401557 - 6401627
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |||||||||    
T  6401557 gtgtcagtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 6401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 30099052 - 30098982
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttc 71  Q
    ||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  30099052 tatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttc 30098982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21814320 - 21814391
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||| | ||||||||||    
T  21814320 gtgtcggtgtcggacacgacacgtgtctggcacggggacacgccttatccaaggaatgttcgtgcttcatag 21814391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 28588685 - 28588613
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||| ||||||||||  |||||||| | |||| | ||||||||||||||||||||    
T  28588685 gtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttcatagg 28588613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 21576756 - 21576685
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||| ||||||||||||||| | |||||||| ||||||||||| |||| |||||||||| ||||||||||    
T  21576756 gtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 39698600 - 39698671
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||  |||| ||||| | ||||||||| |||| |||||||||| ||||||||||    
T  39698600 gtgtcggtgtcggacacgacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42029797 - 42029871
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||| ||||||||||||||||||| | |||| ||||  |||||||||||||| |||||||||| ||| ||||||    
T  42029797 tatgtatcggtgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtgcatcatag 42029871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30502402 - 30502330
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||||||||||||| | || ||||| |||||| |||| ||||||||| ||| | ||||||||    
T  30502402 tatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30542745 - 30542673
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||||||||||||| | || ||||| |||||| |||| ||||||||| ||| | ||||||||    
T  30542745 tatgtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21522809 - 21522880
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || | ||| ||||||||||| |||||| |||||||| ||| ||||||    
T  21522809 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21533375 - 21533446
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || | ||| ||||||||||| |||||| |||||||| ||| ||||||    
T  21533375 gtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 39268612 - 39268541
Alignment:
Q  1 tatgtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttca 72  Q
    ||||||||||||| ||||||||||  | || ||||| ||||||||||| |||| |||||||||| |||||||    
T  39268612 tatgtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 21542089 - 21542159
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||||||||| | || ||||| ||||||||||  ||||||||| ||||| ||| |||||    
T  21542089 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaaggaatgtccgtgcatcata 21542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 19453059 - 19452998
Alignment:
Q  11 tgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttca 72  Q
    ||||||||||||||| | ||| |||||| || ||||||||||||||||| |||| |||||||    
T  19453059 tgtcggacacgacacatgtctcacacggagatacgccttatccaaggagcgtccgtgcttca 19452998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 21191067 - 21190998
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||||| |||| | || ||| | ||||||||||| |||| |||||||||| ||||||||    
T  21191067 gtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 43564929 - 43565001
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||||||||||||||  | || ||| | ||||||||||| |||| || ||||||| |||||||||||    
T  43564929 gtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatagg 43565001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 15382533 - 15382592
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtc 63  Q
    |||||||||| ||||||||||| | || ||||| ||||||||||| |||| |||||||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtc 15382592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 39758345 - 39758380
Alignment:
Q  41 acacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||| ||||||||||||||||||||||    
T  39758345 acacgccttatccgaggagtgtccatgcttcatagg 39758380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 17123097 - 17123166
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| |||||||| || | || |||||||| |||||||| |||| |||||||||| ||||||||||    
T  17123097 tgtcggtgttggacacgaaacatgtccgacacggg-acacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 31084382 - 31084447
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||| | || ||||| |||||| |||| |||| |||||||||| || |||||||    
T  31084382 gtgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcatag 31084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 5414172 - 5414101
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||| |||||||||||||||| | |||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  5414172 gtgtcagtgtcggacacgacacgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttcatag 5414101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 28964259 - 28964188
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||| |||||||||||||||| |||| ||||| ||||||||||| |||| |||||||||||||||||||||    
T  28964259 gtgtctgtgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 23292997 - 23292926
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  23292997 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 49431074 - 49431145
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | ||  |||| |||||||||||||||| |||||||||||||||| ||||    
T  49431074 gtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatag 49431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 46083991 - 46083920
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||| || ||||||||||||| | |||||| ||||||||||||||||   |||||||||||||||||||||    
T  46083991 gtgtcagtatcggacacgacacgtgtctgacgcggggacacgccttataagaggagtgtccatgcttcatag 46083920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 30982878 - 30982808
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||| |||||||||| | || ||||| ||||||||||| |||||| |||||||| |||||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 16073442 - 16073514
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||||||||| || | || |||||   ||||||||| |||| ||||||||||||||||||||||    
T  16073442 gtgtcggtgtcggacacgatacatgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatagg 16073514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 12895285 - 12895214
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||  |||| ||||  ||||||||||| |||| |||||||| | ||||||||||    
T  12895285 gtgtcggtgtcggacacgacatgtatccgacatcgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 24613700 - 24613629
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||||| |||||||||| | ||||||||  ||||||| || |||| |||||||||| |||||||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcatagg 24613629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 12323968 - 12324038
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||| ||||| | | || |||||| |||| |||||||| |||||||||| |||||||||    
T  12323968 gtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcata 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 19097904 - 19097835
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||| ||| ||||| | |||||||||||||||||||||| |||| |||||||  ||||||||||    
T  19097904 tgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta-ccaaagagtgtctgtgcttcatag 19097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 53381602 - 53381529
Alignment:
Q  4 gtgtcggtgtcggacac-gacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||||||| ||| | |||| ||||| ||||||| ||| |||| |||||||||| |||||||||||    
T  53381602 gtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 53381529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 19500858 - 19500786
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||||||||||||   ||||| || | | ||||||| ||||||||||| ||| |||||||||||    
T  19500858 gtgtcggtgtcggacacgacacgcctctgataccgaggcacgcctaatccaaggagtatccgtgcttcatagg 19500786  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32273524 - 32273461
Alignment:
Q  12 gtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||| |||| || ||||||||||| |  ||||||||||||||  ||||||||||    
T  32273524 gtcggacacgacacgtatccgatacggggacacgacaaatccaaggagtgtcggtgcttcatag 32273461  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 715603 - 715545
Alignment:
Q  17 acacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| | || ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  715603 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 752929 - 752871
Alignment:
Q  17 acacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| | || ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  752929 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 8423728 - 8423658
Alignment:
Q  5 tgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||| || || ||||| ||||||||||| |||  || ||||||| ||| ||||||    
T  8423728 tgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 4157484 - 4157553
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||||||||||||||||| | || ||||| | || |||||| || | ||||||||| |||||||||    
T  4157484 gtgtcggtgtcggacacgacacatgtccgacaccgagaaacgcctaattcgaggagtgtctatgcttcat 4157553  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 3947766 - 3947702
Alignment:
Q  10 gtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||| | || |||||  |||||| ||| |||| |||||||||| |||||||||    
T  3947766 gtgtcggacacgacacgtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 7424742 - 7424774
Alignment:
Q  41 acacgccttatccaaggagtgtccatgcttcat 73  Q
    |||||||| ||||||||||||||||||||||||    
T  7424742 acacgcctaatccaaggagtgtccatgcttcat 7424774  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 19482727 - 19482799
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    |||||||| | ||||||||||| | || ||||| ||||||| ||| |||| |||||||| | |||||||||||    
T  19482727 gtgtcggtattggacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatagg 19482799  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 29205527 - 29205587
Alignment:
Q  15 ggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||| | || ||||| ||||||||||| |||| |||||||| | ||||||||||    
T  29205527 ggacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

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Target: scaffold0623 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 5993 - 5926
Alignment:
Q  7 tcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||| ||||||||| | |||||||| | ||||||||||||||||||||||||| ||| |||||    
T  5993 tcggtgtcgaacacgacacgtgtctgacacagagacacgccttatccaaggagtgtccgtgcctcata 5926  T

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Target: scaffold0306 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 13454 - 13523
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||||||||||   ||||||||  |||||| ||| ||||||||||||||| ||||||||    
T  13454 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 13523  T

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Target: scaffold0152 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 21873 - 21804
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcat 73  Q
    ||||||||||||||||||||||   ||||||||  |||||| ||| ||||||||||||||| ||||||||    
T  21873 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 21804  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 241653 - 241724
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||| ||||||||||||||||| | || ||||| ||||||||||| |||| || ||||||| ||||||||||    
T  241653 gtgttggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

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Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 473 - 403
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    |||||||||||||||||||| | | || ||||| ||||||| ||| |||| |||||||||| |||||||||    
T  473 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 3849 - 3776
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcataggg 77  Q
    |||| ||||||||||||||||| | || ||||  | ||||||||| |||| |||||||||| ||||||||||||    
T  3849 gtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtccttgcttcataggg 3776  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 92875 - 92940
Alignment:
Q  9 ggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcata 74  Q
    ||||||||||||||||| | || |||||  |||||||||| |||| |||||||||| |||||||||    
T  92875 ggtgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: scaffold0380 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 8649 - 8721
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||| |||| | ||||||||| | || ||||| |||| |||||| ||||||||||||||| |||||||||||    
T  8649 gtgtctgtgttgaacacgacacgtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatagg 8721  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 71784 - 71856
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||||||||||||||| |||| | || ||||| |||||||| || |||| |||||||||  |||||||||||    
T  71784 gtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcatagg 71856  T

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Target: scaffold0083 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 45541 - 45470
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | |||||||| | |||| |||| |||||| || ||| | ||||||||||    
T  45541 gtgtcggtgtcggacacgacacgtgtctgacaccgcgacatgcctaatccaaagattgtacgtgcttcatag 45470  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 8846 - 8917
Alignment:
Q  4 gtgtcggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||| | || ||||| | ||||||||| |||  |||||| ||| ||||||||||    
T  8846 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

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Target: scaffold0793 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 4879 - 4821
Alignment:
Q  17 acacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||| | || ||||| ||||||||||| |||| |||||||||| ||||||||||    
T  4879 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 14580 - 14646
Alignment:
Q  9 ggtgtcggacacgacacctatctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    ||||||||||||||||| | || ||||| | ||||||||| ||| ||||||||| | ||||||||||    
T  14580 ggtgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcatag 14646  T

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Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 15045 - 15090
Alignment:
Q  30 ctgacacggggacacgccttatccaaggagtgtccatgcttcatag 75  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||    
T  15045 ctgacacggggacacgccttatccgaggagtgtttgtgcttcatag 15090  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 3384 - 3428
Alignment:
Q  32 gacacggggacacgccttatccaaggagtgtccatgcttcatagg 76  Q
    ||||| ||||||||||| |||| |||||||||| |||||||||||    
T  3384 gacactgggacacgcctaatccgaggagtgtccgtgcttcatagg 3428  T

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