View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_36 (Length: 336)
Name: NF9056_low_36
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 35520327 - 35520013
Alignment:
| Q |
1 |
attcaagagcggtataatcatattttacagcttctacagcattcaacattacaagcttcatcgacaccctcaaatcctagtcccaatcaaccttctatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | ||| |
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| T |
35520327 |
attcaagagcggtataatcatattttacagcttctacagcattcaacattacaagcttcatcaagaccctcgaatcctagtcccaatcaaccttttgtca |
35520228 |
T |
|
| Q |
101 |
actctgttatatctaatcctgcagctttaagttcattctcttctcccacttttggtaagatctttgaccactgggttgtagattctggtgccattgacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
35520227 |
actctgttatatctaatcctgcagctttaagttcatcctcttctcccacttttggtaagatctctgaccactgggttgtagattctggtgccattgacca |
35520128 |
T |
|
| Q |
201 |
tatcacacattccttacataactttatctcttatcacacaatttctcatgtgtttatgtcttacctaatggccagaaaaccattgccacaatttcaggca |
300 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35520127 |
tatcacacattccttacataattttgtctcttatcacacaatttctcatgtgtttatgtcttacctaatggccataaaaccattgccacaatttcaggca |
35520028 |
T |
|
| Q |
301 |
ccgtgcaactttctc |
315 |
Q |
| |
|
||||||||||||||| |
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|
| T |
35520027 |
ccgtgcaactttctc |
35520013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 33765771 - 33766090
Alignment:
| Q |
1 |
attcaagagcggtataatcatattttacagcttctacagcattcaacattacaagcttcatcgacaccctcaaatcctagtcccaatcaaccttctatca |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||| |
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|
| T |
33765771 |
attcaagagcagtataatcagattttacagcttctacaacattcaacattacaagcttcatcaacaccctcgaatcctagtccaaatcaaccttctgtca |
33765870 |
T |
|
| Q |
101 |
actctgttatatctaatcctgcagctttaagttcattctcttctcccacttttggtaagatctttgaccactgggttgtagattctggtgccattgacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
33765871 |
actctgttatatctaatcctgcagctttaagttcatcctcttctcccacttttggtaagatctctgaccactgggttgtagattctggtgccactgacca |
33765970 |
T |
|
| Q |
201 |
tatcacacattccttacataactttatctcttatcacacaatttctcatgtgtttatgt-cttacctaatggccagaaaaccattgccacaatttcaggc |
299 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
33765971 |
tatcacacattccttacataactttgtctcttatcacacaatttctcctgtgtttatgtccttatctaatggctagaaaaccattgccacaatttcaggc |
33766070 |
T |
|
| Q |
300 |
accgtgcaactttctccatc |
319 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
33766071 |
accgtgcaactttctccatc |
33766090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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