View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9056_low_4 (Length: 758)
Name: NF9056_low_4
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 318 - 741
Target Start/End: Original strand, 13396715 - 13397142
Alignment:
| Q |
318 |
gagctaagggaaacatcctaggtattggctgtttggtc-agtgatgaggtaccaaagcttcaaaatgnnnnnnnnnngtt---gaagggctagtctcaaa |
413 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
13396715 |
gagctaagggaaacatcctgggtattggctgtttggtctagtgatgaggtaccaaagcttcaaaatgttttttttttttttttgaagggctagtctcaaa |
13396814 |
T |
|
| Q |
414 |
cttgattagcataggtcagttgtgtgaccaagggatggaagtacacttcaacaaatctaattatctggtaactaataagaaaggagaaatgttaatgaag |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |
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| T |
13396815 |
tttgattagcataggtcagttgtgtgaccaagggatggaagtacacttcaacaaatctgattatccggtaactaataagaaaggagaagtgttaatgaag |
13396914 |
T |
|
| Q |
514 |
ggaattagatctaaaaataattcttacaaatgggttccacaacaagaaggccagaatgaaaaacaacctaggatgttgcataaaatgttaaaacatcagg |
613 |
Q |
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| T |
13396915 |
ggaattagatctaaaaataattgttacaaatgggttccacaacaagaaggtcagaatgaaaaacaatctaggatgttgcataaaatgttgaaacatcagg |
13397014 |
T |
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| Q |
614 |
agatctctaatgttcttgaactcccacattctggtggtataaatcatcggagaagtgtctctgggagatgcttttctttgagaaataatcagattaatgt |
713 |
Q |
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| T |
13397015 |
ggatctctaatgttcttgaactcccacattctggtggtataaatcatcggagaagtgtctctggaagatgctctttcttgagaaataatcagattaatgt |
13397114 |
T |
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| Q |
714 |
tcaacattactctatgagggatcttgtt |
741 |
Q |
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| T |
13397115 |
tcaacattactctatgagggatcttgtt |
13397142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 13394011 - 13394170
Alignment:
| Q |
17 |
acatcagtctaagaacaagaagatatctcatccttggatttgtcattattgtgggagaaagggtcatataagaccattctgcttcaaactgtatggatgt |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
13394011 |
acatcagtctaagaacaagaagatatctcaaccttggatttgtcattattgtgggagagagggtcatataagaccattctgcttcaaactgtatggatat |
13394110 |
T |
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| Q |
117 |
cccaatcaatctaagcataagtcatctaaatcagaagtgagaaatttcaagaaagagtgg |
176 |
Q |
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| T |
13394111 |
cccaatcaatctaagaataagtcatctaaatcagaagtgagaaatgtcaagaaagagtgg |
13394170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 175 - 316
Target Start/End: Original strand, 13394193 - 13394333
Alignment:
| Q |
175 |
ggctaatggtccacacctctcacagaacctcatatagtgaagattggtatcttgacagtggttgttccagacacatgactggagtgaataagttatctaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13394193 |
ggctaatggtccacacctctcacagaacctcatatagtgaagattgatatcttgacaatggttgttccagacacatgactggagtgaat-agttatctaa |
13394291 |
T |
|
| Q |
275 |
agatgtaagatcttgtgataacaactatgttaccttggtgat |
316 |
Q |
| |
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| T |
13394292 |
agatgtaagatcctgtgataacagctatgttaccttggtgat |
13394333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 178 - 741
Target Start/End: Original strand, 12387237 - 12387799
Alignment:
| Q |
178 |
taatggtccacacctctcacagaacctcatatagtgaagattggtatcttgacagtggttgttccagacacatgactggagtgaataagttatctaaaga |
277 |
Q |
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|||||||| ||| ||||| | || ||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
12387237 |
taatggtctacatttctcagaaaatctcatctagtgaagactggtattttgacagtggctgttccagacacatgactggagtgaataagttatccaaagt |
12387336 |
T |
|
| Q |
278 |
tgtaagatcttgtgataacaactatgttacctt-ggtgatagagctaagggaaacatcctaggtattggctgtttggtcagtgatgaggtaccaaagctt |
376 |
Q |
| |
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|||||||| |||||||||| |||||||||||| |||||| |||||||||||| || | |||||| | || || | ||| |||| ||||||||||| |
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| T |
12387337 |
tgtaagattgtgtgataacagctatgttacctttggtgatggagctaagggaagaatattgggtattagaagtctgattagtaatgacttaccaaagctt |
12387436 |
T |
|
| Q |
377 |
caaaatgnnnnnnnnnngttgaagggctagtctcaaacttgattagcataggtcagttgtgtgaccaagggatggaagtacacttcaacaaatctaatta |
476 |
Q |
| |
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|||||| ||| |||| |||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
12387437 |
gaaaatgtttttgaa--gttaaaggactagcctttaacttgattagcataagtcagttgtgcgaccaagggatggaagtacacttcaacaaatccgattg |
12387534 |
T |
|
| Q |
477 |
tctggtaactaataagaaaggagaaatgttaatgaagggaattagatctaaaaataattcttacaaatgggttccacaacaagaaggccagaatgaaaaa |
576 |
Q |
| |
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| ||||||||||||||||||| || || ||||||| | |||||| |||| ||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
12387535 |
tttggtaactaataagaaaggtgatgtgctaatgaatgaaattaggtctactaataattgctacaagtgggttccacaacaagactatcagaatgaaaaa |
12387634 |
T |
|
| Q |
577 |
caacctaggatgttgcataaaatgttaaaacatcaggagatctctaatgttcttgaactcccacattctggtggtataaatcatcggagaagtgtctctg |
676 |
Q |
| |
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|||||||||||||| || | |||||| ||||||| ||| ||||||||| ||||||||| ||||||| || | |||||| |||| | ||||| ||||| |
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| T |
12387635 |
caacctaggatgttccacataatgttgaaacatctggaaatctctaatagtcttgaacttccacattttgatagtataagtcatatgggaagtatctcta |
12387734 |
T |
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| Q |
677 |
ggagatgcttttctttgagaaataatcagattaatgttcaacattactctatgagggatcttgtt |
741 |
Q |
| |
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| T |
12387735 |
gaagatgctccttctggataaatactcagattgatgttcaactttactctattatggatcctgtt |
12387799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 12387184 - 12387228
Alignment:
| Q |
82 |
atataagaccattctgcttcaaactgtatggatgtcccaatcaat |
126 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
12387184 |
atataagaccattatgcttcaaactgtatagatatcccaatcaat |
12387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 412 - 497
Target Start/End: Complemental strand, 25678837 - 25678752
Alignment:
| Q |
412 |
aacttgattagcataggtcagttgtgtgaccaagggatggaagtacacttcaacaaatctaattatctggtaactaataagaaagg |
497 |
Q |
| |
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||||||||||||||| | ||||||||||| ||||||||||| || |||||||||||||| | | |||||| ||| || ||||||| |
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| T |
25678837 |
aacttgattagcataagccagttgtgtgatcaagggatggatgtgaacttcaacaaatctgaatgtctggtgactgatgagaaagg |
25678752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 568
Target Start/End: Original strand, 19195853 - 19196009
Alignment:
| Q |
412 |
aacttgattagcataggtcagttgtgtgaccaagggatggaagtacacttcaacaaatctaattatctggtaactaataagaaaggagaaatgttaatga |
511 |
Q |
| |
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||||||||||||||| ||| ||||| | |||||||||||||| |||||||||||||| | | | |||||||| || ||||||||||||| |||||| |
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| T |
19195853 |
aacttgattagcataatccagctgtgtaatcaagggatggaagtgaacttcaacaaatctgaatgtttggtaactgatgagaaaggagaaatactaatga |
19195952 |
T |
|
| Q |
512 |
agggaattagatctaaaaataattcttacaaatgggttccacaacaagaaggccaga |
568 |
Q |
| |
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|| ||||||| ||| | |||| ||| | ||||| |||||| ||||||| |||| |
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| T |
19195953 |
gaggtattagatttaaggaaaattgttaaatgtgggtaccacaagaagaaggtcaga |
19196009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 21528420 - 21528374
Alignment:
| Q |
213 |
gaagattggtatcttgacagtggttgttccagacacatgactggagt |
259 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||| ||||||| |
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| T |
21528420 |
gaagactggtattttgacagtggttgttccagacacatgtctggagt |
21528374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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