View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9056_low_5 (Length: 625)
Name: NF9056_low_5
Description: NF9056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9056_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 140 - 607
Target Start/End: Original strand, 3723010 - 3723474
Alignment:
| Q |
140 |
gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt |
239 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
3723010 |
gatgtttgaagtcattacagaaactttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaagatgctgacacaattaagg----t |
3723105 |
T |
|
| Q |
240 |
aggcatacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaag |
339 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3723106 |
aggcatacgttgtatgcgccgagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctcaaaacattactgctatcgttaag |
3723205 |
T |
|
| Q |
340 |
gaggaaatccttgacttggatttcatatcaactccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3723206 |
gaggaaatccttgacttggatttcatatcaactccacctgatcttattgtgctcaacttgaaaggaagactaacaaagttgcctgattggactccaaatc |
3723305 |
T |
|
| Q |
440 |
tcaagtatcttgtgaagttaagacttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatttgtg |
539 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723306 |
tcaagtatcttgtgaagttaagacctggcttatctaacttagtcagtgatccactagactctttgaagaatttgcctagtctattgaggctgaatttgtg |
3723405 |
T |
|
| Q |
540 |
ggatgatg-ccttttctggtgaaagtttacattttcatgttgaagggtttccaaaactaagggaactgg |
607 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723406 |
ggatgatgcccttttctggtgaaagtttacattttcatgttgaagggtttccaaaactaagggaactgg |
3723474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 140 - 605
Target Start/End: Complemental strand, 3355958 - 3355493
Alignment:
| Q |
140 |
gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt |
239 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
3355958 |
gatgtttgaagtcattacagaaactttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaagatgctgacacaattaaggaagtt |
3355859 |
T |
|
| Q |
240 |
aggcatacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaag |
339 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
3355858 |
aggcatacgttgtatgcgccgagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctctaaacatcactgctatcgttaag |
3355759 |
T |
|
| Q |
340 |
gaggaaatccttgacttggatttcatatcaactccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3355758 |
gaggaaatccttgacttggatttcatatcagcaccacccgatcttattgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatc |
3355659 |
T |
|
| Q |
440 |
tcaagtatcttgtgaagttaagacttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatttgtg |
539 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||| || ||||||| || | ||||||||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
3355658 |
tcaagtaccttgtgaagttaagacttggcttatctaacatagccactgatccattaaactctttgaagaatttgccaagtttgttgaggctgaatttgtg |
3355559 |
T |
|
| Q |
540 |
ggatgatgccttttctggtgaaagtttacattttcatgttgaagggtttccaaaactaagggaact |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3355558 |
ggatgatgccttttctggtgaaagtttacactttcaagttgaagggtttccaaaactaagggaact |
3355493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 140 - 575
Target Start/End: Complemental strand, 3309225 - 3308787
Alignment:
| Q |
140 |
gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt |
239 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||| ||||||| |||||||| || |
|
|
| T |
3309225 |
gatgcttgaagtcattacagaagctttactttttggaagccgatcatggtgcattaggccttatcagagagctcaaaatgttgacacagttaaggaagtt |
3309126 |
T |
|
| Q |
240 |
aggcatacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaag |
339 |
Q |
| |
|
||||||||| || ||| || |||||||||||||| |||| | ||||||||||||||||||| |||||||| ||| |||||||||| || | | || |
|
|
| T |
3309125 |
aggcatacgatgcgtgcagcaacaatatggaaatgcactatgcgatgcaatacaagagatgaaaaaccttgaacctcttaacattactgttaaagatgag |
3309026 |
T |
|
| Q |
340 |
gaggaaatccttgacttggatttcatatcaact---ccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaa |
436 |
Q |
| |
|
| |||||||||||||||||||| ||||||||| ||||| |||| | || |||||||||||||| || |||||| |||||||||||||||||||| |
|
|
| T |
3309025 |
aatgaaatccttgacttggattttatatcaactccaccacctaatctaagagttctcaacttgaaaggcggattaacaaggttgcctgattggattccaa |
3308926 |
T |
|
| Q |
437 |
atctcaagtatcttgtgaagttaagacttggcttatctaactt-agtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatt |
535 |
Q |
| |
|
| ||| ||||||||||||||||||||||||| ||||||||||| | | | |||||||||||| |||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
3308925 |
acctccagtatcttgtgaagttaagacttggtttatctaacttcaatga-tgatccactagactctttgaagaatttaactagtttatttaggctgaatt |
3308827 |
T |
|
| Q |
536 |
tgtgggatgatgccttttctggtgaaagtttacattttca |
575 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3308826 |
tgtgggatgatgccttttctggtgaaagattacattttca |
3308787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 145 - 562
Target Start/End: Complemental strand, 3302532 - 3302115
Alignment:
| Q |
145 |
ttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaattaggca |
244 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||| ||||||||| | |||||||| |||||||||||| ||| ||| |||||||| || |||| |
|
|
| T |
3302532 |
ttgaaatctttacaaaagctttactttttggaagcaaatcatggtggaataaagcttatccaagagctcaaaatgttgaaacagttaaggaagttgggca |
3302433 |
T |
|
| Q |
245 |
tacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaaggagga |
344 |
Q |
| |
|
|| | | |||| |||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||| || ||| |||||| |||||| || |
|
|
| T |
3302432 |
taaagtctgtgcggcaagaatatcgaactgcattatctgctgcaatacaagagatgaaacaacttgaatctcttaatattggtgctataactaaggatga |
3302333 |
T |
|
| Q |
345 |
aatccttgacttggatttcatatcaactccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatctcaag |
444 |
Q |
| |
|
|||||||||||||||| | |||| ||||| || ||||| ||||||||||||||| | |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
3302332 |
aatccttgacttggatcttgcatcagctccatcccgtcttagagtgctcaacttgaaatgtagactaaccaagttgcccaattggattccaaatctcaag |
3302233 |
T |
|
| Q |
445 |
tatcttgtgaagttaagacttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatttgtgggatg |
544 |
Q |
| |
|
| |||||||||| |||||||||| ||||||||||| | |||||||||||| |||||||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
3302232 |
tctcttgtgaagctaagacttggtttatctaacttcgaagatgatccactagactctttgaagaatttacctagtttgttgaggctgaatttgtgggatg |
3302133 |
T |
|
| Q |
545 |
atgccttttctggtgaaa |
562 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
3302132 |
atgccttttctggtgaaa |
3302115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 154 - 589
Target Start/End: Complemental strand, 3220049 - 3219614
Alignment:
| Q |
154 |
ttacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaattaggcatacgttgta |
253 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||| | ||| ||| |||||||| ||||||||| | || |
|
|
| T |
3220049 |
ttacaaaagctttactttttggaagcagatcatggtggaatagaccttatcgaagagctcaaaaagttgaaacagttaaggaagttaggcataaggcgtg |
3219950 |
T |
|
| Q |
254 |
tgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaaggaggaaatccttga |
353 |
Q |
| |
|
|||| |||||||| ||||||||||| | |||||||| ||||||| || |||||||||| || ||||||||||| | |||| ||||| ||||| |
|
|
| T |
3219949 |
tgcggagtgaatatggtaatgcattatgcaatacaatacaacagatgaaccatcttgaatctctgaatattactgctatagcggaggatgaaattcttga |
3219850 |
T |
|
| Q |
354 |
cttggatttcatatcaactccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatctcaagtatcttgtg |
453 |
Q |
| |
|
||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| | ||||||||| |
|
|
| T |
3219849 |
cttggattttatatcaactccacctaatcttaaagtgctcaacttgaaaggtagactaacaaagttgcctaattggattccaaaactccaatatcttgtg |
3219750 |
T |
|
| Q |
454 |
aagttaagacttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatttgtgggatgatgcctttt |
553 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||| ||||||||||| ||||| | | |||||||| ||||| ||||||||||||| |||| |
|
|
| T |
3219749 |
aagttaaggcttggcttatctaacttcgaacatgatccactagactctttgaagaacttgccaaatttattgaggttgaatctgtgggatgatgcatttt |
3219650 |
T |
|
| Q |
554 |
ctggtgaaagtttacattttcatgttgaagggtttc |
589 |
Q |
| |
|
||||||| | ||| |||||| | |||| |||||||| |
|
|
| T |
3219649 |
ctggtgataatttgcattttgaagttggagggtttc |
3219614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 140 - 590
Target Start/End: Original strand, 3202478 - 3202928
Alignment:
| Q |
140 |
gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt |
239 |
Q |
| |
|
|||||||||| || || || ||||||||||||| || ||| ||| ||||||||||||||||| || |||||||||||| ||| | | |||||||| || |
|
|
| T |
3202478 |
gatgtttgaaatctttgcaacagctttactttttagatgcagatcatggtggaatagaccttattcaagagctcaaaatgttgagaaagttaaggaagtt |
3202577 |
T |
|
| Q |
240 |
aggcatacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaag |
339 |
Q |
| |
|
||||||| | || |||| ||||||||||||||| |||||||||| |||||||| ||||||| || |||||||||| | | ||||||||||| | | || |
|
|
| T |
3202578 |
aggcataagacgtgtgcggcaagaatatggaaatgaattatgtgctacaatacaaaagatgaaccatcttgaatctctatatattactgctatagatgag |
3202677 |
T |
|
| Q |
340 |
gaggaaatccttgacttggatttcatatcaactccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatc |
439 |
Q |
| |
|
|| | ||| |||||||||||||| ||||| ||||||| |||||| || ||||||||| |||| |||||||||||||||||| ||||||||||||| | |
|
|
| T |
3202678 |
gaagtaattcttgacttggattttgtatcagctccacctaatcttaaagtactcaacttggaaggtagactaacaaagttgcctaattggattccaaaac |
3202777 |
T |
|
| Q |
440 |
tcaagtatcttgtgaagttaagacttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatttgtg |
539 |
Q |
| |
|
|| | |||||||||||| |||| ||| ||||||||||||| | |||||||||||| |||||||||||||||| | | | |||||| |||||||||| |
|
|
| T |
3202778 |
tccaatatcttgtgaagctaaggcttagcttatctaactttgaacatgatccactagacactttgaagaatttgccaaatttgttgaggttgaatttgtg |
3202877 |
T |
|
| Q |
540 |
ggatgatgccttttctggtgaaagtttacattttcatgttgaagggtttcc |
590 |
Q |
| |
|
||| ||||| ||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
3202878 |
ggacgatgcattttctggtgatagtttacatttttcagttggagggtttcc |
3202928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 199 - 573
Target Start/End: Original strand, 3215152 - 3215526
Alignment:
| Q |
199 |
cttatccaggagctcaaaatgctgacacaattaaggaaattaggcatacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagaga |
298 |
Q |
| |
|
|||||||| |||||||||||| ||| ||| |||||||| ||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3215152 |
cttatccaagagctcaaaatgttgaaacagttaaggaagttaggcataaagtccgtgcggcaagaatatggaaatgcattatctgctgcaatacaagaga |
3215251 |
T |
|
| Q |
299 |
tgaaacaccttgaatctccaaacattactgctatcgttaaggaggaaatccttgacttggatttcatatcaactccacccgatcttactgtgctcaactt |
398 |
Q |
| |
|
||||||| |||||||||| || ||| |||||| |||||| |||||||||||||||||| | |||| ||||| | ||||| |||||||| || |
|
|
| T |
3215252 |
tgaaacaacttgaatctcttaatattggtgctataactaaggatgaaatccttgacttggatcttgcatcagctccatctcgtcttagagtgctcaattt |
3215351 |
T |
|
| Q |
399 |
gaaaggaagactaacaaagttgcctgattggattccaaatctcaagtatcttgtgaagttaagacttggcttatctaacttagtcagtgatccactagat |
498 |
Q |
| |
|
|||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
3215352 |
gaaatgtagactaacaaagttgcctaattggattccaaatctccagtatcttgtgaagctaagacttggtttatctaacttcaaagatgatccactagac |
3215451 |
T |
|
| Q |
499 |
tctttgaagaatttgcctagtctattgaggctgaatttgtgggatgatgccttttctggtgaaagtttacatttt |
573 |
Q |
| |
|
|||||||| | ||| |||| | | |||||||||||||| ||||||||||| |||||||||||||| || |||||| |
|
|
| T |
3215452 |
tctttgaatactttacctaatttgttgaggctgaatttatgggatgatgctttttctggtgaaagattgcatttt |
3215526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 140 - 562
Target Start/End: Complemental strand, 3320827 - 3320399
Alignment:
| Q |
140 |
gatgtttgaagtcattacagaagctttactttttggaagcaaatcgaggtggaatagaccttatccaggagctcaaaatgctgacacaattaaggaaatt |
239 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||| ||| | ||||||||||||||||| |||||||||| | ||||||| |||||||| || |
|
|
| T |
3320827 |
gatgtttgatatctttacaaaagctttactttttggaagcagatcatgatggaatagaccttatccgagagctcaaaaggttgacacagttaaggaagtt |
3320728 |
T |
|
| Q |
240 |
aggcatacgttgtatgcgcgaagaatatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaag |
339 |
Q |
| |
|
||||||| | || | | || || ||||||| | |||||| | |||| |||||||||||||||| |||||||||| |||||||||| || | || |
|
|
| T |
3320727 |
aggcataagatgcgtacagcaacaacatggaaacgaattatgcgatgcagtacaagagatgaaacatcttgaatctctcaacattactgttaaaaatgag |
3320628 |
T |
|
| Q |
340 |
gaggaaatccttgacttggatttcatatcaact------ccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattc |
433 |
Q |
| |
|
| || ||||||||||||||||| |||||||| ||||| |||||| || |||||||||||||| ||| |||||||||| ||| ||||||||| |
|
|
| T |
3320627 |
aatgatatccttgacttggattttgtatcaactgatccaccacctaatcttagagttctcaacttgaaaggtagattaacaaagtttcctaattggattc |
3320528 |
T |
|
| Q |
434 |
caaatctcaagtatcttgtgaagttaagacttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaa |
533 |
Q |
| |
|
|||| ||| | ||||||||||||||||| ||||| ||||||||||| | |||||||||||| |||||||||||||| |||| | | || |||||||| |
|
|
| T |
3320527 |
caaaactccaatatcttgtgaagttaaggcttggtttatctaacttcgaagatgatccactagactctttgaagaatttacctaatttgtttaggctgaa |
3320428 |
T |
|
| Q |
534 |
tttgtgggatgatgccttttctggtgaaa |
562 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3320427 |
tttgtgggatgatgccttttctggtgaaa |
3320399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 264 - 575
Target Start/End: Complemental strand, 3196836 - 3196525
Alignment:
| Q |
264 |
atatggaaatgcattatgtgctgcaatacaagagatgaaacaccttgaatctccaaacattactgctatcgttaaggaggaaatccttgacttggatttc |
363 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||| |||||||||||| ||| ||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
3196836 |
atatggaaatgcagtatgtactgcagtacaagagatgatcaaccttgaatctctaaatattactgctataactgaggaagaaatccttgacttggatttt |
3196737 |
T |
|
| Q |
364 |
atatcaactccacccgatcttactgtgctcaacttgaaaggaagactaacaaagttgcctgattggattccaaatctcaagtatcttgtgaagttaagac |
463 |
Q |
| |
|
||||| |||||||| |||||| |||||||| ||||||| |||||||||||||| || |||||||||||||| || | ||| |||||||| || | |
|
|
| T |
3196736 |
gtatcagctccaccctatcttaaagtgctcaatttgaaagctagactaacaaagtttcccgattggattccaaaacttgaatatattgtgaagctagtgc |
3196637 |
T |
|
| Q |
464 |
ttggcttatctaacttagtcagtgatccactagattctttgaagaatttgcctagtctattgaggctgaatttgtgggatgatgccttttctggtgaaag |
563 |
Q |
| |
|
||||||| | ||| || | | |||||||||||| ||||||||||||||||| | | | ||||||| | ||||||||||||||| ||| |||||||||| |
|
|
| T |
3196636 |
ttggcttttgtaaatttgaccatgatccactagactctttgaagaatttgccaaatttgatgaggcttattttgtgggatgatgcatttgctggtgaaag |
3196537 |
T |
|
| Q |
564 |
tttacattttca |
575 |
Q |
| |
|
||| |||||||| |
|
|
| T |
3196536 |
tttgcattttca |
3196525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 3357911 - 3357776
Alignment:
| Q |
12 |
atgaacttgagaacatccaattatcacttaaggatgcagacacaaaggctgcagatga---aagagggggagcaaatgaaggagtcaaaacatgggtaag |
108 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||||||||||||| |||||| ||||| | |||| ||||| || |||||| ||||||| ||||| | |
|
|
| T |
3357911 |
atgaacttgagatcatccaattctcactcaaggatgcagacacaagggctgctgatgaaggaggaggaggagccaacgaaggaatcaaaacttgggtgaa |
3357812 |
T |
|
| Q |
109 |
gcagctgagggaagcatcttttcgcatagaagatgt |
144 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| |
|
|
| T |
3357811 |
gcagctaagagaagcatcttttcgcatagaagatgt |
3357776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 3200537 - 3200672
Alignment:
| Q |
12 |
atgaacttgagaacatccaattatcacttaaggatgcagacacaaaggctgcagatga---aagagggggagcaaatgaaggagtcaaaacatgggtaag |
108 |
Q |
| |
|
|||||||||||| ||| ||| | ||||| ||||||||||||||||||||||| ||||| | |||| ||||| || |||||| ||||||| ||||| | |
|
|
| T |
3200537 |
atgaacttgagagcattcaagtttcactcaaggatgcagacacaaaggctgctgatgaaggaggaggaggagccaacgaaggaatcaaaacttgggtgaa |
3200636 |
T |
|
| Q |
109 |
gcagctgagggaagcatcttttcgcatagaagatgt |
144 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| |
|
|
| T |
3200637 |
gcagctaagagaagcatcttttcgcatagaagatgt |
3200672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 30990125 - 30990068
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
||||||||||||||||||||| | |||| | ||||||||| ||||||||||||||||| |
|
|
| T |
30990125 |
tgaaggagtcaaaacatgggtgaagcaggttagggaagcagcttttcgcatagaagat |
30990068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 3304431 - 3304352
Alignment:
| Q |
65 |
gatgaaagagggggagcaaatgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt |
144 |
Q |
| |
|
|||||| |||| ||| | ||||||||||||||||||||||| | ||| | || |||| ||||||||||||||||||||| |
|
|
| T |
3304431 |
gatgaaggaggaggaaccaatgaaggagtcaaaacatgggtgaagcaagtaagagaagtatcttttcgcatagaagatgt |
3304352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22104357 - 22104414
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
||||||||||||||||||||| | ||| || |||| |||| ||||||||||||||||| |
|
|
| T |
22104357 |
tgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagat |
22104414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22179051 - 22179108
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
||||||||||||||||||||| | ||| || |||| |||| ||||||||||||||||| |
|
|
| T |
22179051 |
tgaaggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagat |
22179108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 3221937 - 3221878
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt |
144 |
Q |
| |
|
||||||||| ||||| ||||| | |||||| || ||||||||||||| |||||||||||| |
|
|
| T |
3221937 |
tgaaggagttaaaacttgggtgaagcagctaagagaagcatcttttcacatagaagatgt |
3221878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 3280719 - 3280660
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt |
144 |
Q |
| |
|
||||||||| ||||| ||||| | |||||| || |||||||||||||| ||||||||||| |
|
|
| T |
3280719 |
tgaaggagttaaaacttgggtgaagcagctaagagaagcatcttttcgtatagaagatgt |
3280660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 22052378 - 22052437
Alignment:
| Q |
83 |
aatgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
|||||||||||||||| |||||| | ||| || ||||| ||| ||||||||||||||||| |
|
|
| T |
22052378 |
aatgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagat |
22052437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 21936787 - 21936844
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
||||||||| ||||| ||||| | |||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
21936787 |
tgaaggagttaaaacttgggtgaagcagcttagggaagcagctttttgcatagaagat |
21936844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22010468 - 22010525
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
|||||||||||||| |||||| | ||| || ||||||||| |||||| |||||||||| |
|
|
| T |
22010468 |
tgaaggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagat |
22010525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22034163 - 22034220
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
|||||||||||||| |||||| | ||| || ||||| ||| ||||||||||||||||| |
|
|
| T |
22034163 |
tgaaggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagat |
22034220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 22186634 - 22186691
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagat |
142 |
Q |
| |
|
|||||||||||||| |||||| | ||| || ||||||||| |||||| |||||||||| |
|
|
| T |
22186634 |
tgaaggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagat |
22186691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 41947731 - 41947633
Alignment:
| Q |
41 |
aaggatgcagacacaaaggctgcagatgaaagagggggagcaaa---tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcata |
136 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||| |||| | | ||||||||||||||||||||| | |||||||| |||||||||||||||||| |
|
|
| T |
41947731 |
aaggatgcagacacaagggctgttgatgaaggagaaggaggatatgctgaaggagtcaaaacatgggtgaagcagctgaaagaagcatcttttcgcata |
41947633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 314
Target Start/End: Complemental strand, 11116213 - 11116170
Alignment:
| Q |
271 |
aatgcattatgtgctgcaatacaagagatgaaacaccttgaatc |
314 |
Q |
| |
|
||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
11116213 |
aatgcattaagtgctgcaatagaagagatgcaacaccttgaatc |
11116170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 49386901 - 49386842
Alignment:
| Q |
85 |
tgaaggagtcaaaacatgggtaaggcagctgagggaagcatcttttcgcatagaagatgt |
144 |
Q |
| |
|
||||||||||| ||| ||||| | | |||| || |||||||||||||||||||||||||| |
|
|
| T |
49386901 |
tgaaggagtcataacttgggtgaagtagcttagagaagcatcttttcgcatagaagatgt |
49386842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University