View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9057_low_3 (Length: 363)
Name: NF9057_low_3
Description: NF9057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9057_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 11532929 - 11533281
Alignment:
| Q |
17 |
cacgtatacatctttagattagtgaggagcaacttgaaatca------atatatgagtcccacgaggttaatcgtcgtttatataatccttatatcgtaa |
110 |
Q |
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| T |
11532929 |
cacgtatacatctttagagtggtgaggagcaacttgaaatctggagggacatatgagtcccacgaggttaatcgtcgtttatataatccttatgtcgtaa |
11533028 |
T |
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| Q |
111 |
ttaatacaaattttgtattaatccaacataaaggtagaggggattctaagaaacctaattattgttaaaactctgaattaaaccaatcttatttgtgcaa |
210 |
Q |
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| T |
11533029 |
ttaatataaactttgtattaatccaacataaagatagaggggattcgaagaaacctaattgttgttaaaactctgaattaaatcaatcttatttgtgtaa |
11533128 |
T |
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| Q |
211 |
tcaatcaatcttacaaacaatcttcgtactttattgcttggaataatttgatgcacttgcc-aatttgacatcacccgtcactcacataatacattgata |
309 |
Q |
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||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
11533129 |
tcaatcaatcttacaaacactcttcctactttattgcttggaat-atttgatgcacttgccaaatttgacatcacccatcactcacataatacattgata |
11533227 |
T |
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| Q |
310 |
acaacaatnnnnnnnnnttgaaataggtaactagtttcaaattataacaaaatt |
363 |
Q |
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| T |
11533228 |
acaacaataaaaaaaatttgaaataggtaactagtttaaaattataacaaaatt |
11533281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 11453848 - 11453493
Alignment:
| Q |
17 |
cacgtatacatctttagattagtgaggagcaacttgaaatca------atatatgagtcccacgaggttaatcgtcgtttatataatccttatatcgtaa |
110 |
Q |
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|||||||||||||||||| | ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11453848 |
cacgtatacatctttagagtgatgacgagcaacttgaaatctggagggacatatgagtcccacgaggttaatcgtcgtttatataatccttatgtcgtaa |
11453749 |
T |
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| Q |
111 |
ttaatacaaattttgtattaatccaacataaaggtagaggggattctaagaaacctaattattgttaaaactctgaattaaaccaatcttatttgtgcaa |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| | ||| ||||||||||||||||||||||||||||||||| |
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| T |
11453748 |
ttaatacaaactttgtattaatccaacataaaggtagaggggattcgaagaaaactaattgtggttcaaactctgaattaaaccaatcttatttgtgcaa |
11453649 |
T |
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| Q |
211 |
tcaatcaatcttacaaacaatcttcgtactttattgcttggaataatttgatgcacttgcc-aatttgacatcacccgtcactcacataatacattgata |
309 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
11453648 |
tcaatcaatcttacaaacactcttcgtactttattgcttggaataatttgatgcacttgccaaatttgacattacccgtcactcacataatacattgata |
11453549 |
T |
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| Q |
310 |
acaacaat--nnnnnnnnnttgaaataggtaactagtttcaaattataacaaaatt |
363 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
11453548 |
acaacaataagaaatttttttgaaataggtaactagtttaaaattataacaaaatt |
11453493 |
T |
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