View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9057_low_5 (Length: 254)

Name: NF9057_low_5
Description: NF9057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9057_low_5
NF9057_low_5
[»] chr4 (8 HSPs)
chr4 (49-254)||(53495018-53495223)
chr4 (117-240)||(53498990-53499113)
chr4 (117-240)||(53492685-53492808)
chr4 (12-57)||(53495296-53495341)
chr4 (155-252)||(53502116-53502213)
chr4 (117-188)||(40310117-40310188)
chr4 (117-188)||(40320193-40320264)
chr4 (117-188)||(40329659-40329730)
[»] chr7 (1 HSPs)
chr7 (117-249)||(37188616-37188748)
[»] chr8 (3 HSPs)
chr8 (173-246)||(42991102-42991175)
chr8 (134-219)||(43347368-43347453)
chr8 (176-220)||(35017795-35017839)
[»] chr6 (1 HSPs)
chr6 (158-219)||(33449584-33449645)
[»] chr3 (2 HSPs)
chr3 (190-246)||(38214371-38214427)
chr3 (190-246)||(38218590-38218646)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 53495223 - 53495018
Alignment:
Q  49 acacatgttcatatattagtgttagtgtcgtgtccaatgtttttattagtatgatatttgaaaaagtgcttacacaatgcgttgaggattccaaagaatg 148  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53495223 acacatgtttatatattagtgttagtgtcgtgtccagtgtttttattagtatgatatttgaaaaagtgcttacacaatgcgttgaggattccaaagaatg 53495124  T
Q  149 gagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53495123 gagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatg 53495024  T
Q  249 gttctc 254  Q
    ||||||    
T  53495023 gttctc 53495018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 53499113 - 53498990
Alignment:
Q  117 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttcc 216  Q
    |||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| || |  |||||||| ||||| || ||||| ||    
T  53499113 cttacacaatacgttgaggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaaattgttgctctctgttacctttgcc 53499014  T
Q  217 ttgacaaaacacattggtgtgaag 240  Q
    ||| | ||||||||||||||||||    
T  53499013 ttggctaaacacattggtgtgaag 53498990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 53492808 - 53492685
Alignment:
Q  117 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttcc 216  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| || |  | |||||| ||||| |  ||||| ||    
T  53492808 cttacacaatacgttgtggattccatagaattgagtatgtgtgaaaatctgcagttgggtcaaaccaaaggtaaatttgttgctctctgtcacctttgcc 53492709  T
Q  217 ttgacaaaacacattggtgtgaag 240  Q
    ||| | |||||||||||| |||||    
T  53492708 ttggctaaacacattggtatgaag 53492685  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 53495341 - 53495296
Alignment:
Q  12 ttggtgttccatccacagaaaaactgcattcaatcaaacacatgtt 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  53495341 ttggtgttccatccacagaaaaactgcattcaatcaaacacatgtt 53495296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 53502213 - 53502116
Alignment:
Q  155 gtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgtatggttc 252  Q
    |||||||||||||| | ||| ||||||||||||| |||||||||||| || |||||||| |||||||  || ||||| ||||||||  ||||||||||    
T  53502213 gtgtgaaaatcagctgctgggtcaaaccatagatagaattgttgttccctgtttcctttgccttgactgaaaacattagtgtgaaggatgtatggttc 53502116  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 40310117 - 40310188
Alignment:
Q  117 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagat 188  Q
    ||||||||||  | ||| ||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||    
T  40310117 cttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagat 40310188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 40320193 - 40320264
Alignment:
Q  117 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagat 188  Q
    ||||||||||  | ||| ||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||    
T  40320193 cttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagat 40320264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 40329659 - 40329730
Alignment:
Q  117 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagat 188  Q
    ||||||||||  | ||| ||||||||||||||||||| ||||| ||||||||||  ||||||||||| ||||    
T  40329659 cttacacaatatggtgatgattccaaagaatggagtaagtgtggaaatcagcagaaggatcaaaccaaagat 40329730  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 37188748 - 37188616
Alignment:
Q  117 cttacacaatgcgttgaggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttcc 216  Q
    |||||||||| ||||| || ||||| || ||||| || ||||||||||| |||||||| ||||||||||| | ||||||||| ||||| || ||||||||    
T  37188748 cttacacaattcgttgtgggttccagaggatggaataagtgtgaaaatctgcagttgggtcaaaccataggtagaattgttgctctctgttaccttttcc 37188649  T
Q  217 ttgacaaaacacattggtgtgaagagtgtatgg 249  Q
    ||| | ||||||||||||||||||| |||||||    
T  37188648 ttggctaaacacattggtgtgaagaatgtatgg 37188616  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 42991175 - 42991102
Alignment:
Q  173 ggatcaaaccatagatggaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgta 246  Q
    ||||||||||| || | ||||||||||||||| |||||||| |||||| ||||||| || ||||| ||| ||||    
T  42991175 ggatcaaaccagaggtagaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgta 42991102  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 219
Target Start/End: Complemental strand, 43347453 - 43347368
Alignment:
Q  134 ggattccaaagaatggagtatgtgtgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttccttg 219  Q
    ||||||||  |||||| |||  ||||||||||||||||||| |||||||| || || |||||||| |||||  | |||||||||||    
T  43347453 ggattccagtgaatggtgtaattgtgaaaatcagcagttgggtcaaaccagaggtgaaattgttgctctctgctcccttttccttg 43347368  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 35017839 - 35017795
Alignment:
Q  176 tcaaaccatagatggaattgttgttctctatttccttttccttga 220  Q
    ||||||||||| | |||||||||||||||||| ||||| ||||||    
T  35017839 tcaaaccataggtagaattgttgttctctattacctttaccttga 35017795  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 33449645 - 33449584
Alignment:
Q  158 tgaaaatcagcagttggatcaaaccatagatggaattgttgttctctatttccttttccttg 219  Q
    ||||||||||||||||| |||||||| ||||  |||||||| |||||| |||| ||||||||    
T  33449645 tgaaaatcagcagttgggtcaaaccaaagataaaattgttgctctctacttccatttccttg 33449584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 38214371 - 38214427
Alignment:
Q  190 gaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgta 246  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||| ||| ||||    
T  38214371 gaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgta 38214427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 38218590 - 38218646
Alignment:
Q  190 gaattgttgttctctatttccttttccttgacaaaacacattggtgtgaagagtgta 246  Q
    ||||||||||||||| |||||||| |||||| ||||||| || ||||| ||| ||||    
T  38218590 gaattgttgttctctgtttcctttgccttgagaaaacacgtttgtgtggagaatgta 38218646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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