View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9058_high_1 (Length: 491)
Name: NF9058_high_1
Description: NF9058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9058_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 465
Target Start/End: Original strand, 1156905 - 1157355
Alignment:
| Q |
15 |
agagaaagtaccaagaaactatgaacactgatttaggaaacaaaaatgaattgcaaatataaaaccctttccttagtgacattgacagtcatttctttta |
114 |
Q |
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|||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1156905 |
agagcaagtactaagaaactaagaacaatgatttaggaaacaaaaatgaattgcaaatataaaaccttttccttagtgacattgacagtcatttctttta |
1157004 |
T |
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| Q |
115 |
ctgaacttgtgtttttcattcccaaattcttgatcagatccaataacgtgtgatcgatggagtgcggcaagacaatcagatcatcagtaatgatgaaagt |
214 |
Q |
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| T |
1157005 |
ctgaacttgtgtttttcattcccaaattcttgatcagatccaataacgtgtgattgatggagtgtggcgagacaaatagatcatcagtaatgacaaaagt |
1157104 |
T |
|
| Q |
215 |
ggtagcacctttaacaaatccattgcacaactgtgctagcgaaactgaacagttcaaacgattaccacacctaccataaatccttgttgtacctatgctc |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||| |
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| T |
1157105 |
cgtagcacctttaacaaatccattgcacagctgtgctagggaaactgaacggttcaagcgattaccacacctaccataaatatattttgtacctatgctc |
1157204 |
T |
|
| Q |
315 |
aaataagggcaatgatgaccatgatctttggaacacatgaagtaatttgtggggacagtatcatcaatattaattttgagagtgctgcaataatcttctg |
414 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1157205 |
aaataagggcaatgatgaccatgatctttcgaacacctgaagtaaattgtagggacagtatcatcaatattaattttgagagtgctgcaataatcttcgg |
1157304 |
T |
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| Q |
415 |
atgaattattaatcggcaacagtccaatattttcgacactttgatagagag |
465 |
Q |
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| T |
1157305 |
atgagttattaatcggcaacaatccaatattttcgacactttgatagagag |
1157355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 30 - 435
Target Start/End: Original strand, 23258938 - 23259347
Alignment:
| Q |
30 |
aaactatgaacactgatttaggaaacaaaaatgaattgcaaatat-aaaaccctttccttagtgacattgacagtcatttcttttactgaacttgtgttt |
128 |
Q |
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|||||| ||||| ||||||||| | ||||||| |||||||||||| |||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||| |
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| T |
23258938 |
aaactaagaacaatgatttagggagcaaaaattaattgcaaatattaaaaccttttccttcgtgacatagaccgtcatttcttttactgaacttgtgttt |
23259037 |
T |
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| Q |
129 |
ttcattcccaaattcttgatcagatccaataacgtgtgatcgatggagtgcggcaagacaatcagatcatcagtaatgatgaaagtggtagcacctttaa |
228 |
Q |
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| T |
23259038 |
ctcatttgcaaattattgaccagaccaaacaacgtgtgatccatagagtgcggcaagacagttagatcatcagtaacaaaaaacatagaatcatctttaa |
23259137 |
T |
|
| Q |
229 |
caaatccattgcacaactgtgctagcgaaactgaacagttcaaacgattaccacacctaccataaatccttgttgtacctatgctcaaataagggcaatg |
328 |
Q |
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|||||||||||| |||||| | ||||| |||| ||||| |||||| ||||||||| |||| | ||| ||||||| ||||| |||| | ||| | |
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| T |
23259138 |
caaatccattgcctgactgtgtcatggaaaccgaacggttcatacgattttcacacctacaataatttctttttgtaccaatgcttaaattattacaacg |
23259237 |
T |
|
| Q |
329 |
atga---ccatgatctttggaacacatgaagtaatttgtggggacagtatcatcaatattaattttgagagtgctgcaataatcttctgatgaattatta |
425 |
Q |
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|| | | | | |||||||| |||||||||||| | ||| ||||||||||||| |||||||||||| ||| ||||||||||| ||||| ||| || |
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| T |
23259238 |
attatagtcttcaaacttggaacaaatgaagtaatttttagggtcagtatcatcaatgttaattttgagactgccacaataatcttcagatgagttagta |
23259337 |
T |
|
| Q |
426 |
atcggcaaca |
435 |
Q |
| |
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||||||||| |
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| T |
23259338 |
ctcggcaaca |
23259347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 23251223 - 23251337
Alignment:
| Q |
74 |
taaaaccctttccttagtgacattgacagtcatttcttttactgaacttgtgtttttcattcccaaattcttgatcagatccaataacgtgtgatcgatg |
173 |
Q |
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||||||| || |||| ||||||||||| ||||||||||| | ||||||||| |||| ||||| || || ||| ||||||| || | | ||||||| ||| |
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| T |
23251223 |
taaaacctttccctttgtgacattgaccgtcatttctttgatcgaacttgtgctttttattccaaagttgttgctcagatcaaagatcatgtgatccatg |
23251322 |
T |
|
| Q |
174 |
gagtgcggcaagaca |
188 |
Q |
| |
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|| |||||||||||| |
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| T |
23251323 |
gaatgcggcaagaca |
23251337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 23251509 - 23251579
Alignment:
| Q |
342 |
ttggaacacatgaagtaatttgtggggacagtatcatcaatattaattttgagagtgctgcaataatcttc |
412 |
Q |
| |
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|||||||| |||||||| |||||||| || ||||||| ||||||| ||||||||| |||||||||||| |
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| T |
23251509 |
ttggaacatatgaagtactttgtgggctgagagtcatcaaaattaattctgagagtgcggcaataatcttc |
23251579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 23316708 - 23316758
Alignment:
| Q |
75 |
aaaaccctttccttagtgacattgacagtcatttcttttactgaacttgtg |
125 |
Q |
| |
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|||||| |||| ||||||||||| ||||||||||||||| | ||||||||| |
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| T |
23316708 |
aaaaccttttctttagtgacatttacagtcatttcttttgcagaacttgtg |
23316758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 23327061 - 23327138
Alignment:
| Q |
71 |
atataaaaccct-ttccttagtgacattgacagtcatttcttttactgaacttgtgtttttcattcccaaattcttga |
147 |
Q |
| |
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|||||||| ||| ||||||||| |||||||||||||||| |||| |||||||||| |||| || || ||||||||| |
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| T |
23327061 |
atataaaaacctgttccttagtaacattgacagtcatttgctttagtgaacttgtgctttttatcccataattcttga |
23327138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 23322871 - 23322919
Alignment:
| Q |
373 |
tatcatcaatattaattttgagagtgctgcaataatcttctgatgaatt |
421 |
Q |
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||||||| || |||| ||| |||||||||||||||||||| |||||||| |
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| T |
23322871 |
tatcatcgatgttaaatttaagagtgctgcaataatcttccgatgaatt |
23322919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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