View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9058_low_4 (Length: 466)
Name: NF9058_low_4
Description: NF9058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9058_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 18221791 - 18222224
Alignment:
| Q |
18 |
aatttagccatcttttcctacctaaacaaaacaaacagaatcagataaacaattaacaacaatactaaccaatgatgcactgagccactgacacaaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18221791 |
aatttagccatcttttcctacctaaacaaaacaaacagaatcagataaacaattaacaacaatactaaccaatgatgcactgagccactgacacaaacat |
18221890 |
T |
|
| Q |
118 |
agacatgaacacggacaccagacacgacactgacatgtgcatcgatgtcggtactaatttaagaaaataaattaattaaacgtaatcacatgagtcagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18221891 |
agacatgaacacggacaccagacacgacactgacatatgcatcgatgtcggtactaatttaagaaaataaattaattaaacataatcacatgagtcagtg |
18221990 |
T |
|
| Q |
218 |
ttgaacattgacatgcctttgatcagagttgtcagtgctacacagatacaaacattggcggattnnnnnnnnnnnnncagatccagataagcgatttctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
18221991 |
ttgaacattgacatgcctttgatcagagttgtcagtgctacagagatacaaacattggcggattaaaaacaaaaaaacagatccagataagcgatttctg |
18222090 |
T |
|
| Q |
318 |
ttggaaacagcttaaattaaaaacaaaattatggaaagaattaaaggtacaagcaatccaaaatcaattatgaaataaccaaacaaaagaaaacaaatta |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
18222091 |
ttggaaacagattaaattaaaaacaaaattatggaaagaattaaaggtacaagcaatccaaaatcaattatg-aataactaaacaaaagaaaacaaatta |
18222189 |
T |
|
| Q |
418 |
aagtaaagtatatggtgacagctatgtagaacacc |
452 |
Q |
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| T |
18222190 |
aagtaaagtatatggtgacagctatgtagaacacc |
18222224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 9381410 - 9381366
Alignment:
| Q |
172 |
taatttaagaaaataaattaattaaacgtaatcacatgagtcagt |
216 |
Q |
| |
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|
| T |
9381410 |
taatttaagtaaataaatttattaaatgtaatcacatgtgtcagt |
9381366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 29096949 - 29096994
Alignment:
| Q |
164 |
gtcggtactaatttaagaaaataaattaattaaacgtaatcacatg |
209 |
Q |
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||||||| ||||||||||||||||||||||| || ||||||||||| |
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| T |
29096949 |
gtcggtaataatttaagaaaataaattaattgaatgtaatcacatg |
29096994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 35972078 - 35972025
Alignment:
| Q |
172 |
taatttaagaaaataaattaattaaacgtaatcacatgagtcagtgttgaacat |
225 |
Q |
| |
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|||||||| |||||| | ||||| || |||||||||||||||||||||| |||| |
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|
| T |
35972078 |
taatttaataaaatagaataattgaatgtaatcacatgagtcagtgttgtacat |
35972025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 12710001 - 12710050
Alignment:
| Q |
159 |
tcgatgtcggtactaatttaagaaaataaattaattaaacgtaatcacat |
208 |
Q |
| |
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||||| |||||| |||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
12710001 |
tcgatatcggtaataatttgagaaaataaattaattgaacgtaaacacat |
12710050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 259
Target Start/End: Original strand, 31812002 - 31812034
Alignment:
| Q |
227 |
gacatgcctttgatcagagttgtcagtgctaca |
259 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
31812002 |
gacatgcctttgatcagaggtgtcagtgctaca |
31812034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 18268053 - 18268005
Alignment:
| Q |
172 |
taatttaagaaaataaattaattaaacgtaatcacatgagtcagtgttg |
220 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||||| ||| |||||| |
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| T |
18268053 |
taatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttg |
18268005 |
T |
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