View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9058_low_6 (Length: 451)
Name: NF9058_low_6
Description: NF9058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9058_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 10497326 - 10497041
Alignment:
| Q |
8 |
gtttggtgtttgacagtatggttcatcaatagaaagcggagcggaatctcaatttcatttagctgtgatttttggtttcggtgtttactatttgtggtgt |
107 |
Q |
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| T |
10497326 |
gtttggcgtttgacagtatggttcatcaatagaaagcggagcggaatctcaatttcatttagctgtgatttttggtttcggtgtttactatttgtggtgt |
10497227 |
T |
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| Q |
108 |
atgtttttgtcttcttgttttggtgatcaggggtattttgttttaagtttagatgtcactgtttctgttgtatcttatcttgttttgggtggaggtttaa |
207 |
Q |
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| T |
10497226 |
atgtttttgtcttcttgttttggtgatcaggggtattttgttttaagtttagatgtcactgtttctgttgtatcttatcttgttttgggtggaggtttaa |
10497127 |
T |
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| Q |
208 |
ttctgctgaacatttctagcctcattgtataatgtgtttctgtcatgtgttatgccttataataaatcttctttttggcctttcaa |
293 |
Q |
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| T |
10497126 |
ttctgccgaacatttctagcctcattgtataatgtgtttctgtcatgtgttatgccttataataaatcttctttttggcctttcaa |
10497041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 306 - 435
Target Start/End: Complemental strand, 10496996 - 10496867
Alignment:
| Q |
306 |
gagaaatgatagttattacgaaggatgcaaccaacgaaatgcacgaatgaatcctgatctgtttattttaaaccaagccttgcccgatttccgtcaaatt |
405 |
Q |
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| T |
10496996 |
gagaaatgatagttattacgaaggatgcaaccaacgaaatgcacgaatgaatcctgatccgtttattttataccaagccttgcctgatttccgtcaaatt |
10496897 |
T |
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| Q |
406 |
ctatatatccgtcttttcaaacgatactaa |
435 |
Q |
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| T |
10496896 |
ctatatatccgtcctttcaaacgatactaa |
10496867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 13335187 - 13335095
Alignment:
| Q |
8 |
gtttggtgtttgacagtatggttcatcaatagaaagcggagcggaatctcaatttcatttagctgtgatttttggtttcggtgtttactattt |
100 |
Q |
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| T |
13335187 |
gtttggcgtttgacagtatggttcatcaatagaaagcggagcgaaatctcaatttcatttagctgtgatttttggtttcggtgtttactattt |
13335095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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