View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9059_high_16 (Length: 278)
Name: NF9059_high_16
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 28408716 - 28408859
Alignment:
| Q |
11 |
gattattctatacactaaaatcttcgtaaatctgcaatgaatcatacaattgttttctttagttccaatagtttcgaccaccttttgtcgaaagaagcct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28408716 |
gattattctatacactaaaatcttcgtaaatctgcaatgaatcatacaattgttttctttagttccaatagtctcgaccaccttttgtcgaaagaagcct |
28408815 |
T |
|
| Q |
111 |
gactttgtccacttgtatctgaaaaacaaaacaactgttgatca |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28408816 |
gactttgtccacttgtatctgaaaaacaaaacaactgttgatca |
28408859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 28408908 - 28408983
Alignment:
| Q |
203 |
ctacatccttgtattgcaatgaccttctgaagttttcaaataagaaaagtacttacattgtatagtaccctcggat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28408908 |
ctacatccttgtattgcaatgaccttctcaagttttcaaataagaaaagtacttactttgtatagtaccctcggat |
28408983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University