View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_high_4 (Length: 664)
Name: NF9059_high_4
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 16 - 652
Target Start/End: Complemental strand, 44210570 - 44209934
Alignment:
| Q |
16 |
catcataccaacccaaggtctactgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattctt |
115 |
Q |
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| T |
44210570 |
catcataccaacccaaggtctactgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattctt |
44210471 |
T |
|
| Q |
116 |
ctaatgactgtccttcacagactcgacgctccaggaatccccaatatcctggaatgaaccaacaaaatagtaagatttctggaattttaaaatgccacag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44210470 |
ctaatgactgtccttcacagactcgacgctccaggaatccccaatatcctggaatgaaccaacaaaatggtaagatttctggaattttaaaatgccacag |
44210371 |
T |
|
| Q |
216 |
cagaatagacagcctagagaaataagaattgtaaattttggacattaggaaattagcaagcagtgagagtcaaccatgcagatcttggtcctgtagtttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210370 |
cagaatagacagcctagagaaataagaattgtaaattttggacattaggaaattagcaagcagtgagagtcaaccatgcagatcttggtcctgtagtttg |
44210271 |
T |
|
| Q |
316 |
tgatacacaaatgttaattttggattttgtagatgaattgacatgtgataattgatggtcctagagatgaatctgccctatccaagcctcaccatgttat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210270 |
tgatacacaaatgttaattttggattttgtagatgaattgacatgtgataattgatggtcctagagatgaatctgccctatccaagcctcaccatgttat |
44210171 |
T |
|
| Q |
416 |
tgatgtgctgatgattgtgaataatgctgcacaaagtgttgaaatttaattcaatgcaataacaactacgctttctcccactaggtgggttggcttcatg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210170 |
tgatgtgctgatgattgtgaataatgctgcacaaagtgttgaaatttaattcaatgcaataacaactacgctttctcccactaggtgggttggcttcatg |
44210071 |
T |
|
| Q |
516 |
ggtcaattgatgtcatacagtcttgacatgtattttggttcaaagttgatcatttacacctaactcactcttattgattttccaatagttttccttggtt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44210070 |
ggtcaattgatgtcatacagtcttgacatgtattttggttcaaagttgatcatttacacctaactcactcttattgattttccaatagttttccttggtt |
44209971 |
T |
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| Q |
616 |
tctgtctccgattgtttgactatcctccatttgatgt |
652 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
44209970 |
tctgtctccgattgtttgactatcctccatttgatgt |
44209934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 44210593 - 44210553
Alignment:
| Q |
35 |
ctactgcatcaaccagcaacgcccatcataccaacccaagg |
75 |
Q |
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| T |
44210593 |
ctactgcatcaaccagcaacgtccatcataccaacccaagg |
44210553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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