View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_high_5 (Length: 594)
Name: NF9059_high_5
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 11 - 578
Target Start/End: Original strand, 35992984 - 35993551
Alignment:
| Q |
11 |
cacagaccaataaggaaaaatatatgaccaggaagggtacgttagggtttagatctacaataaatcaacggctccacaatagttaccccatttactgcag |
110 |
Q |
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| T |
35992984 |
cacagaccaataaggaaaaatatatgagcaggaagggtacgttaaggtttagatctacaataaatcaacggcaccacaatagttaccccatttactgcag |
35993083 |
T |
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| Q |
111 |
caaactatttaagagagtatctttagttactatggttagcccaccaatcaaacattaattttggctgcaaacttaacctcaattaaatcttaaacatatg |
210 |
Q |
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| T |
35993084 |
caaactatttaagagagtatctttagttactatagttagcccaccaatcaaacattaattttggctgcaaacttaacctcaattaaatcttaaacatatg |
35993183 |
T |
|
| Q |
211 |
ttgaaatactatacagttggtctacagactaaaatcaaattgttcagaaggnnnnnnngttatgtatcaactatcaactaatacaaaaccgaaggttagg |
310 |
Q |
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| T |
35993184 |
ttgaaatactattcagttggtctacagactaaaatcaaattgttcagaaggaaaaaaagttatgtatcaactatcaactgatacaaaaccgaaggttagg |
35993283 |
T |
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| Q |
311 |
atggtattcccacatcacacctcagcaatttattcatgaaaaatgctaccctctatgacaatgacttacagttttccctatagggaagatgccaaatata |
410 |
Q |
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| T |
35993284 |
atggtattcccacatcacacctcagcaatttattcatgaaaaatgctaccctctattacaatgacttacagttttccctatagggaagatgccaaatata |
35993383 |
T |
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| Q |
411 |
ctaaaacatatattcccatctttgtctccgctacataagacgttaaatcgttggtgagaagaatttgacagttcctcaaatgaatcgtcaccatcatcca |
510 |
Q |
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| T |
35993384 |
ctaaaacatatattcccatctttgtctccgctacataagacgttaaatcgttggtgagaagaatttgacagttcctcaaatgaatcgtcaccatcatcca |
35993483 |
T |
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| Q |
511 |
tgaagccattatccccagataccaatccaggcattcgaggaatttttggagcaggaggaaagaaacgg |
578 |
Q |
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| T |
35993484 |
tgaagccattatccccagataccaatccaggcattcgaggaatttttggagcaggaggaaagaaacgg |
35993551 |
T |
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