View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9059_low_10 (Length: 652)
Name: NF9059_low_10
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_10 |
 | |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0172 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 11 - 652
Target Start/End: Original strand, 53415521 - 53416161
Alignment:
| Q |
11 |
gataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttgga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53415521 |
gataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttgga |
53415620 |
T |
|
| Q |
111 |
gctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctctaacgagttcggat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
53415621 |
gctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagataagaaaagccacctctaacgagttcggat |
53415720 |
T |
|
| Q |
211 |
gggaagaacaaaaagaacttgaaactgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgtaatgtgtgattgtgatctat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53415721 |
gggaagaacaaaaagaacttgaaactgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgtaatgtgtgattgtgatctat |
53415820 |
T |
|
| Q |
311 |
gtatcgtacgggatagagaaaagatatctcaaaccagagcaaaaattaagaaaatgcagcatg--atgcatacaaaagaagatctaaaaactgtggcact |
408 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
53415821 |
gtatcgtacaggatagagaaaagatatctcaaaccagcgcaaaaattaagaaaatgcagcatgatatgcatacaaaagaagatctaaaaactgtggcact |
53415920 |
T |
|
| Q |
409 |
tggcacgtccccaagataaactacctagatcccaggatatcagttgcctgttgcaagcggcatgaggttcctattgaaaaggtctgaacttattcacttg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53415921 |
tggcacgtccccaagataaactacctagatcccaggatatcagttgcctgttgcaagcggcatgaggttcctattgaaaaggtctgaacttattcacttg |
53416020 |
T |
|
| Q |
509 |
ttattactacaattgataacacatattttcagaaatgtacttatggatggcacggaatttgtgnnnnnnnnnnctttcttcaaatgtacacatctgaagt |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
53416021 |
ttattactacaattgataacacatattttcagaaatgtacttatggatggcacggaatttgtgtttttttt---tttcttcaaatgtacacatctgaagt |
53416117 |
T |
|
| Q |
609 |
cctttctctcacgttttcgatctatgttataaaccatttttcgt |
652 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53416118 |
cctttctctcatgttttcgatctatgttataaaccatttttcgt |
53416161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 53411792 - 53412311
Alignment:
| Q |
11 |
gataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgtttta----aatttagagagcatgcaaacatatact |
106 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||| ||||| | ||||||||| |
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|
| T |
53411792 |
gataatactatttagagtttggaaaccttggtgtaaatgaatttctcgtcactggctcattttattttattttaatttagagggcatgtagacatatact |
53411891 |
T |
|
| Q |
107 |
tggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctctaacgagttc |
206 |
Q |
| |
|
|||| | |||||||||||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
53411892 |
tggattttacttgctttttaattgtaggcttctttgagggagctgaaaatagatttgaaaagggcaagaaaagaaaatt-----cacctctaacgagttc |
53411986 |
T |
|
| Q |
207 |
ggatgggaagaacaaaaagaacttgaaac-tgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgtaatg-------tgtg |
298 |
Q |
| |
|
||| |||||||| || ||||||||| | |||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
53411987 |
ggacgggaagaa---aaggaacttgaatcctgaagcgtaatatacagcttccttagtatctttacacattataattatcaagtataatgactaatgtgtg |
53412083 |
T |
|
| Q |
299 |
attgtgatctatgtatcgtacgggatagagaaaa-gatatctcaaaccagagcaaaaattaagaaaatgcagcatgat--gcatacaaaagaagatctaa |
395 |
Q |
| |
|
||||||| ||||| | ||| |||||||||||| |||| |||||||||| ||||||||| |||||||||| | |||| |||||| ||||||||||||| |
|
|
| T |
53412084 |
attgtgaattatgtcacctacaggatagagaaaaagataactcaaaccagcgcaaaaattgagaaaatgcaacgtgatatgcatacgaaagaagatctaa |
53412183 |
T |
|
| Q |
396 |
aaactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagttgcctgttgcaagcggcatgaggttcctattgaaaaggtctga |
495 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53412184 |
aaactgtggcacttggcacgtcc--aagataaactacctagatcccaggatatcagttgcctggtgcaagcggcatgaggttcctattgaaaaggtctgg |
53412281 |
T |
|
| Q |
496 |
acttattcacttgttattactacaattgat |
525 |
Q |
| |
|
|||| |||||||||||| | |||||||||| |
|
|
| T |
53412282 |
acttcttcacttgttatgattacaattgat |
53412311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 53367018 - 53366501
Alignment:
| Q |
11 |
gataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgtttta---aatttagagagcatgcaaacatatactt |
107 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||| | ||||| || ||||| ||| |
|
|
| T |
53367018 |
gataatactatttagaatttggaaaccttggtgtaaatgaatttcttgtcactggctcattttattttttttaatttagtgggcatgtaa-catattctt |
53366920 |
T |
|
| Q |
108 |
ggagctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctctaacgagttcg |
207 |
Q |
| |
|
||| || ||||||||||||||| |||||| | ||| | ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
53366919 |
ggatctgacttgctttttaattttaggcttttctgagggagctgaaaatagatttgaaaaaggcaagaaaagaaaagt-----cacctctaacgagttcg |
53366825 |
T |
|
| Q |
208 |
gatgggaagaacaaaaagaacttgaaac-tgaagcgtaataaacagcttccttaacatctttggacattataattatcaagtgtaatg-------tgtga |
299 |
Q |
| |
|
|| |||||||| || ||||||||| | |||||||||||| ||| |||||||| |||||| |||||||||||||||| | ||||| ||||| |
|
|
| T |
53366824 |
gacgggaagaa---aaggaacttgaatcctgaagcgtaatatacaccttccttagtatctttacacattataattatcaattataatgactaatgtgtga |
53366728 |
T |
|
| Q |
300 |
ttgtgatctatgtatcgtacgggatagagaaaa-gatatctcaaaccagagcaaaaattaagaaaatgcagcatgat--gcatacaaaagaagatctaaa |
396 |
Q |
| |
|
||||||| |||||| | ||| |||||||||||| |||| |||||||||| ||||||||| |||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
53366727 |
ttgtgatttatgtaacctacaggatagagaaaaagataactcaaaccagcgcaaaaattgagaaaatgcaacgtgatatgcatacaaaagaagatctaaa |
53366628 |
T |
|
| Q |
397 |
aactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagttgcctgttgcaagcggcatgaggttcctattgaaaaggtctgaa |
496 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||| |||||||||| | |
|
|
| T |
53366627 |
aactgtggcacttggcacgtcc--aagataaactacctagatcctcggataacagttgcctggtgcaaacggcatgaggttcctatcgaaaaggtctaga |
53366530 |
T |
|
| Q |
497 |
cttattcacttgttattactacaattgat |
525 |
Q |
| |
|
||| |||||||||||| | |||||||||| |
|
|
| T |
53366529 |
cttcttcacttgttatgattacaattgat |
53366501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 527 - 652
Target Start/End: Complemental strand, 53366319 - 53366202
Alignment:
| Q |
527 |
acacatattttcagaaatgtacttatggatggcacggaatttgtgnnnnnnnnnnctttcttcaaatgtacacatctgaagtcctttctctcacgttttc |
626 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
53366319 |
acacatattttcagaaatatactcatggatggcacaaaatttgtgttt--------ttttttcaaatgtacacacctgaagtcctttctctcatgttttc |
53366228 |
T |
|
| Q |
627 |
gatctatgttataaaccatttttcgt |
652 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
53366227 |
gatcaatgttataaaccatttttcgt |
53366202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 594 - 652
Target Start/End: Original strand, 53416160 - 53416218
Alignment:
| Q |
594 |
gtacacatctgaagtcctttctctcacgttttcgatctatgttataaaccatttttcgt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53416160 |
gtacacatctgaagtcctttctctcacgtttttgatctatgttataaaccatttttcgt |
53416218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 587 - 649
Target Start/End: Original strand, 53412551 - 53412613
Alignment:
| Q |
587 |
ttcaaatgtacacatctgaagtcctttctctcacgttttcgatctatgttataaaccattttt |
649 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53412551 |
ttcaaatgcacacatttgaagtcctttctctcatgttttcgatctatgttataaaccattttt |
53412613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 260
Target Start/End: Original strand, 53318300 - 53318534
Alignment:
| Q |
25 |
gaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttggagctaact----tgc |
120 |
Q |
| |
|
|||||||||| ||| |||||||||| |||||| |||||||||| | || ||| |||||||||| | | || ||||||||| |||||| || | | |
|
|
| T |
53318300 |
gaatttggaaacctgggtgtgaatggatttctcgtcactggcttgtattatttgaaatttagagggaaaa-aaccatatacttagagctagctgtcttac |
53318398 |
T |
|
| Q |
121 |
tttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctctaacgagttcggatgggaagaaca |
220 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||| |||||||| || |||| ||||||||||||||| | ||||||| ||||| ||| |
|
|
| T |
53318399 |
tttttaattgtaggcaaattagaaggagctgaaaatagatttagaaagggc-----aaaaaaacaaaagccacctctaaagtgttcggacaggaaggaca |
53318493 |
T |
|
| Q |
221 |
aaaagaacttgaa-actgaagcgtaataaacagcttcctta |
260 |
Q |
| |
|
| |||||| || ||||||||||||| |||||||||||| |
|
|
| T |
53318494 |
ggaggaactttaatcctgaagcgtaatatacagcttcctta |
53318534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 295 - 507
Target Start/End: Original strand, 14923221 - 14923434
Alignment:
| Q |
295 |
tgtgattgtgatctatgtatcgtacgggatagagaaaa-gatatctcaaaccagagcaaaaattaagaaaatgcagcatgat--gcatacaaaagaagat |
391 |
Q |
| |
|
|||||||||||| |||||| | ||| ||||| |||||| ||| ||||||||| |||||||||||||||||| | | |||| | || ||||||||| |
|
|
| T |
14923221 |
tgtgattgtgatttatgtaacatacaggataaagaaaaagatggatcaaaccagcgcaaaaattaagaaaatggaacgtgatatgatgactaaagaagat |
14923320 |
T |
|
| Q |
392 |
ctaaaaactgtggcacttggcacgtccccaagataaactacctagatcccaggatatcagttgcctgttgcaagcggcatgaggttcctattgaaaaggt |
491 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
14923321 |
ttaaaaactgtggcacttggcacgtcc--aagataaactacctagatcccaggatatcagttgcctggtgcaagcggcacgaggttcctattgaaaaggt |
14923418 |
T |
|
| Q |
492 |
ctgaacttattcactt |
507 |
Q |
| |
|
||| |||| ||||||| |
|
|
| T |
14923419 |
ctggacttcttcactt |
14923434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 179
Target Start/End: Original strand, 14922949 - 14923115
Alignment:
| Q |
11 |
gataatactctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttgga |
110 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||| || ||||||| |||| |||||||||||||| |||||||||| ||||| ||||||||||| | | |
|
|
| T |
14922949 |
gataatattctttagaatttggaaaccatggtgtggatcaatttctcctcaccggctcattttgtttgaaatttagagggcatgtaaacatatactcgaa |
14923048 |
T |
|
| Q |
111 |
gctaacttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaag |
179 |
Q |
| |
|
||| || |||| |||||||||||| ||||||| ||||||||| ||||| || ||||||| ||||| |
|
|
| T |
14923049 |
gctgac--actttgtaattgtaggctcttttgaaggagctgaaaacagattacgacagggcaaaaaaag |
14923115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 329 - 491
Target Start/End: Complemental strand, 2640 - 2478
Alignment:
| Q |
329 |
aaaagatatctcaaaccagagcaaaaattaagaaaatgcagcatgat--gcatacaaaagaagatctaaaaactgtggcacttggcacgtccccaagata |
426 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||||||||| | |||| | |||||||||||||| |||||||| ||| | ||||| ||| |||||| |
|
|
| T |
2640 |
aaaagataactcaaaccaatgcaaaaattgagaaaatgcaacgtgatatgaggacaaaagaagatcttaaaactgtagcattaggcacatcc--aagata |
2543 |
T |
|
| Q |
427 |
aactacctagatcccaggatatcagttgcctgttgcaagcggcatgaggttcctattgaaaaggt |
491 |
Q |
| |
|
|||||||| || |||||||| |||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
2542 |
aactacctcgaccccaggattacagttgcctggtgcaagcggcacgaggttcccattgaaaaggt |
2478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 2844 - 2793
Alignment:
| Q |
128 |
ttgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaag |
179 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||||| |||||||| |||| |
|
|
| T |
2844 |
ttgtaggctgatctgaaggagctgaaagtagatttggacagggcaaggaaag |
2793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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