View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_13 (Length: 532)
Name: NF9059_low_13
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_13 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 2 - 532
Target Start/End: Original strand, 22749152 - 22749682
Alignment:
| Q |
2 |
aatgagatatagaccgttccacataccctattaaggattcttccacttggagtggcatcaaaaatagacattggagcgcgaaaaatgcagagatgcattt |
101 |
Q |
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||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22749152 |
aatgagatataaacagatccacataccctattaaggattcttccacttggagtggcatcaaaaaaagacattggagcgcgaaaaatgcagagatgcattt |
22749251 |
T |
|
| Q |
102 |
tgttgaagagtagagtagctgtcttataaccagcagtgacgacgagtgttgctctagatagaacacataaagaacttcctatggccaaacatacatagac |
201 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22749252 |
tgttgaagagtagagtagctgttttataaccagcggtgacaacaagtgttgctctagataggacacataaagaacttcctatggccaaacatacatagac |
22749351 |
T |
|
| Q |
202 |
aactaggagtgtagttcctccaacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgtagaagttgaaac |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22749352 |
aactaggagtgtagttcctccaacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgaagaagttgaaac |
22749451 |
T |
|
| Q |
302 |
atgatttcagctatgaatacgagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctcttt |
401 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22749452 |
atgatttcagctatcaatacgagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctcttt |
22749551 |
T |
|
| Q |
402 |
cttcttcttgaacaagttgtccttttggctcaaactcgtcatttgttccaccattctgtacttctttcttctcttctattttgtcaacaccgagaggaag |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22749552 |
cttcttcttgaacaagttgtccttttggctcaaactcgtcatttgttccaccattctgtacttctttcttctcttctattttgtcaacaccgagaggaag |
22749651 |
T |
|
| Q |
502 |
agagacacagagatcctgttgtgatgtactt |
532 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22749652 |
agagacacagagatcctgttgtgatgtactt |
22749682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 22669192 - 22669245
Alignment:
| Q |
22 |
acataccctattaaggattcttccacttggagtggcatcaaaaatagacattgg |
75 |
Q |
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|||||| |||||||| |||||||||||||| |||||||| |||| |||||||| |
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| T |
22669192 |
acatactctattaagaattcttccacttggtgtggcatcgaaaaacgacattgg |
22669245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 22741591 - 22741555
Alignment:
| Q |
395 |
tctctttcttcttcttgaacaagttgtccttttggct |
431 |
Q |
| |
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|||| |||||| ||||||||||||||||||||||||| |
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| T |
22741591 |
tctcgttcttcatcttgaacaagttgtccttttggct |
22741555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 41450243 - 41450646
Alignment:
| Q |
22 |
acataccctattaaggattcttccacttggagtggcatcaaaaatagacattggagcgcgaaaaatgcagagatgcattttgttgaagagtagagtagct |
121 |
Q |
| |
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|||||| ||||||||||||| ||||||||||| | |||||||| ||||| || || || |||||||| | |||||||| |||||||||| ||||||| |
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| T |
41450243 |
acatactctattaaggattcgaccacttggagtagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagct |
41450342 |
T |
|
| Q |
122 |
gtcttataaccagcagtgacgacgagtgttgctctagatagaacacataaagaacttcctatggccaaacatacatagacaactaggagtgtagttcctc |
221 |
Q |
| |
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|||||||||||| | || || | | ||||||| |||| |||||||||||||| ||||| |||| |||||||| | | || || |||||| |
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| T |
41450343 |
gtcttataaccaactgtaacaagtaacaatgctctaacaagaatgcataaagaacttccaatggcaaaaccaacatagacttcaataagagttgttcctt |
41450442 |
T |
|
| Q |
222 |
caacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgtagaagttgaaacatgatttcagctatgaatac |
321 |
Q |
| |
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||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||||| ||| |||||| | || | ||| | |||| |
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| T |
41450443 |
caacaggtggctcgacttcggctgagatgggagttgcccaagccatccaatagttgcttccaatttgaagagcttgaaaaagaatctgagcgaataatat |
41450542 |
T |
|
| Q |
322 |
gagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttgt |
421 |
Q |
| |
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|| ||| ||||||| ||||||||||| || || ||||| ||||| || || ||||| ||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
41450543 |
gaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagttgg |
41450642 |
T |
|
| Q |
422 |
cctt |
425 |
Q |
| |
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|||| |
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| T |
41450643 |
cctt |
41450646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 41437017 - 41437420
Alignment:
| Q |
22 |
acataccctattaaggattcttccacttggagtggcatcaaaaatagacattggagcgcgaaaaatgcagagatgcattttgttgaagagtagagtagct |
121 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | |||||||| ||||| || || || |||||||| | |||||||| |||||||||| ||||||| |
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| T |
41437017 |
acatactctattaaggattcgaccacttggagtagaatcaaaaaacgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagct |
41437116 |
T |
|
| Q |
122 |
gtcttataaccagcagtgacgacg-agtgttgctctagatagaacacataaagaacttcctatggccaaacatacatagacaactaggagtgtagttcct |
220 |
Q |
| |
|
|||||||||||| | || || | | | ||||||| |||| |||||||||||||| ||||| |||| ||||||| | | || || |||||| |
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| T |
41437117 |
gtcttataaccaactgt-acaaagtaacaatgctctaacaagaatgcataaagaacttccaatggcaaaaccaccatagacttcaataagagttgttcct |
41437215 |
T |
|
| Q |
221 |
ccaacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgtagaagttgaaacatgatttcagctatgaata |
320 |
Q |
| |
|
||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||||| ||| |||||| | || | || | |||| |
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|
| T |
41437216 |
tcaacaggtggctcgacttcggctgagatgggagttgcccaagccatccaatagttgcttccaatttgaagagcttgaaaaagaatctgagagaataata |
41437315 |
T |
|
| Q |
321 |
cgagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttg |
420 |
Q |
| |
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|| ||| ||||||| ||||||||||| || || ||||| ||||| || || ||||| ||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
41437316 |
tgaacggtacaagagatcctccatatgcagttgtgatatacttccaatagactgaaaatccaactttacctttctccctttcttcttcttgaacgagttg |
41437415 |
T |
|
| Q |
421 |
tcctt |
425 |
Q |
| |
|
|||| |
|
|
| T |
41437416 |
gcctt |
41437420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 222 - 420
Target Start/End: Complemental strand, 14373981 - 14373783
Alignment:
| Q |
222 |
caacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgtagaagttgaaacatgatttcagctatgaatac |
321 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| | |||||||| ||||||||||||||||| ||| |||||| | || | || | |||| |
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|
| T |
14373981 |
caacaggtggctccacatctgctgagatgggagttgcccacgccatccagtagttgcttccaatttgaagagcttgaaaaagaatataggccaataatat |
14373882 |
T |
|
| Q |
322 |
gagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttg |
420 |
Q |
| |
|
|| || || | || ||||||||||| || || ||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
14373881 |
gaatggtacgacagatcctccatatgcagttgtgatatacttccaatacaccgaaaacccaactttacctttctccctttcttcttcttgaacaagttg |
14373783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 14239168 - 14239571
Alignment:
| Q |
22 |
acataccctattaaggattcttccacttggagtggcatcaaaaatagacattggagcgcgaaaaatgcagagatgcattttgttgaagagtagagtagct |
121 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||| | |||||||| ||||| || || || |||||||| | |||||||| |||||||||| ||||||| |
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|
| T |
14239168 |
acatactctattgaggattcgtccacttggagtagaatcaaaaaatgacatcggggcacggaaaatgcacaagtgcattttattgaagagtatagtagct |
14239267 |
T |
|
| Q |
122 |
gtcttataaccagcagtgacgacgagtgttgctctagatagaacacataaagaacttcctatggccaaacatacatagacaactaggagtgtagttcctc |
221 |
Q |
| |
|
|||||||||||||| || || | | || || |||| |||| ||||||||| |||||||||| |||||||| | || || |||||| |
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|
| T |
14239268 |
gtcttataaccagctgtaacaagtaacaaccctttaacaagaatgcatagagaacttccaatggccaaaccaacatagactttcataagagttgttcctt |
14239367 |
T |
|
| Q |
222 |
caacaggtggctccatatcttttgagatgggagttgaagaagccatccaatagttgcttccaatttgtagaagttgaaacatgatttcagctatgaatac |
321 |
Q |
| |
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||| ||||||| | ||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||| | || | ||| | |||| |
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|
| T |
14239368 |
caatcggtggcttgacatcggctgagatgggagttgccaaagccatccaatagttgcttccaatttgaagagcttgaagaagaatatgagccaataatat |
14239467 |
T |
|
| Q |
322 |
gagcggcacaagagcacctccatatgccgtcgttatatatttccagtacaccgaaaacccaactttaccttgctctctttcttcttcttgaacaagttgt |
421 |
Q |
| |
|
|| || |||||| | || |||||||| || || ||||| ||||| ||||| ||||| ||||||||||||| || ||||||||||||||||| ||||| |
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| T |
14239468 |
gaatggtacaagaactcccccatatgcagttgtgatatacttccaatacactgaaaatccaactttacctttttccctttcttcttcttgaacgagttgg |
14239567 |
T |
|
| Q |
422 |
cctt |
425 |
Q |
| |
|
|||| |
|
|
| T |
14239568 |
cctt |
14239571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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