View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9059_low_14 (Length: 463)

Name: NF9059_low_14
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9059_low_14
NF9059_low_14
[»] chr7 (4 HSPs)
chr7 (16-446)||(22313913-22314345)
chr7 (256-360)||(2867132-2867236)
chr7 (115-198)||(45506886-45506969)
chr7 (115-198)||(45512346-45512429)
[»] chr2 (1 HSPs)
chr2 (62-333)||(41490969-41491240)
[»] chr5 (2 HSPs)
chr5 (74-371)||(34207631-34207928)
chr5 (269-372)||(18301543-18301646)
[»] chr4 (3 HSPs)
chr4 (40-198)||(23858571-23858729)
chr4 (269-360)||(31831909-31832000)
chr4 (257-339)||(23858788-23858870)
[»] chr3 (4 HSPs)
chr3 (257-357)||(11591406-11591506)
chr3 (268-357)||(27488787-27488876)
chr3 (269-371)||(42965925-42966027)
chr3 (268-357)||(27477562-27477651)
[»] chr6 (1 HSPs)
chr6 (263-371)||(3814897-3815005)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 22313913 - 22314345
Alignment:
Q  16 agacaaaagaagagtttgtgatcaaactcaccggcggtaagcgacggggacgattccggcacgatattgagcgatcttaaggaacataggcatagcaaga 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22313913 agacaaaagaagggtttgtgatcaaactcaccggcggtaagcgacggggacgattccggcacgatattgagcgatcttaaggaacataggcatagcaaga 22314012  T
Q  116 tcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtgatcaagattgatgggt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314013 tcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagtgatcaagattgatgggt 22314112  T
Q  216 ttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314113 ttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgt 22314212  T
Q  316 gtttactccatagccttggctgtataggttcccatatccacaagcaccgcctgaaaatacccaaaaaatataataataattaacttaaa--tcattgctt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  22314213 gtttactccatagccttggctgtataggttcccatatccacaagcaccgcctgaaaatacccaaaaaatataataataattaacttaaaggtcattgctt 22314312  T
Q  414 ctgttacagacaccgactccagacatgacattg 446  Q
    ||||| ||||||||||| |||||||||||||||    
T  22314313 ctgttgcagacaccgacaccagacatgacattg 22314345  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 360
Target Start/End: Original strand, 2867132 - 2867236
Alignment:
Q  256 ttcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatcca 355  Q
    |||| ||||||| |||||||| || ||||||||||||||||| ||||| | ||||||||| |||  |||||| |||||||| || ||||| |||||||||    
T  2867132 ttcataacatgcaccacaactcaatccattgttgaatagtgcagtgctcaatgctgctgtatttgttccataaccttggctataaaggtttccatatcca 2867231  T
Q  356 caagc 360  Q
    |||||    
T  2867232 caagc 2867236  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 45506886 - 45506969
Alignment:
Q  115 atcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagt 198  Q
    |||||||||||||||||| || || ||||| |||||||||||| ||||  | ||||| ||||| || ||||| ||||| |||||    
T  45506886 atcaaagtgaggtctagggggattacaccaaccaccattgtcattagggagtgcaaagtttggtggacaaaaatttgtggcagt 45506969  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 45512346 - 45512429
Alignment:
Q  115 atcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagt 198  Q
    |||||||||||||||||| || || ||||| |||||||||||| ||||  | ||||| ||||| || ||||| ||||| |||||    
T  45512346 atcaaagtgaggtctagggggattacaccaaccaccattgtcattagggagtgcaaagtttggtggacaaaaatttgtggcagt 45512429  T

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Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 333
Target Start/End: Original strand, 41490969 - 41491240
Alignment:
Q  62 gggacgattccggcacgatattgagcgatcttaaggaacataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactag 161  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||| | ||| ||||| ||||| ||||||||||||||||    
T  41490969 gggacgattccggcacgatattcagcgattttaaggaacataggcatggcaagatcaaagtgaggacgaggagggttacaccaaccaccattgtcactag 41491068  T
Q  162 gttgagcaaaatttggagggcaaaagtttgttgcagtgatcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaa 261  Q
    |||||||||| || ||||| |||||||| || || ||||| || || || ||| | |||| || ||||||  |    || |   ||||||| | ||||||    
T  41491069 gttgagcaaagttaggaggacaaaagttagtagctgtgatgaaaatggaagggctaccagagtgacaccattgcttgtcatttgcacacttcaattcaaa 41491168  T
Q  262 acatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttg 333  Q
    ||| |  ||||||||||  ||||||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  41491169 acaagaaccacaacttagtccattgttgaatagtgctgtgcttaatgctgctgtgttaactccataaccttg 41491240  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 74 - 371
Target Start/End: Original strand, 34207631 - 34207928
Alignment:
Q  74 gcacgatattgagcgatcttaaggaacataggcatagcaagatcaaagtgaggtctaggtgggttgcaccagccaccattgtcactaggttgagcaaaat 173  Q
    |||||||||||||| || || ||||||||||||||||||||||||||||| ||||  || ||||| ||||| || ||||| ||||| | |||||||||||    
T  34207631 gcacgatattgagcaattttgaggaacataggcatagcaagatcaaagtgtggtcgtggagggttacaccaacctccattatcacttgcttgagcaaaat 34207730  T
Q  174 ttggagggcaaaagtttgttgcagtgatcaagattgatgggtttccagggttacaccaacgtggatcttgatcacacttgagttcaaaacatgctccaca 273  Q
    |||| || ||||| ||||| ||||| |  || ||||| ||  |||||||||  |||||||  ||||| |    |||||| |  |||||||| |  |||||    
T  34207731 ttggtggacaaaaatttgtagcagttactaatattgaaggacttccagggtggcaccaactaggatcattggaacactttaactcaaaacacgagccaca 34207830  T
Q  274 acttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctgaaa 371  Q
    ||| || || |||||||||||||||||||||| |||||||||||| || ||||| ||||| || || || || ||||| ||||| || || |||||||    
T  34207831 actcaaaccgttgttgaatagtgctgtgcttaatgctgctgtgttcacaccataaccttgactatacagatttccataaccacatgctccacctgaaa 34207928  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 18301543 - 18301646
Alignment:
Q  269 ccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctg 368  Q
    ||||| ||||| ||| ||||||| |  ||||||||||  || || ||||||  |||||| ||||| ||||||||||| ||||||||||| ||||| |||     
T  18301543 ccacagcttaaaccactgttgaacaaagctgtgcttaaagcagcagtgtttgttccataaccttgactgtataggtttccatatccacatgcaccaccta 18301642  T
Q  369 aaaa 372  Q
    ||||    
T  18301643 aaaa 18301646  T

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Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 23858571 - 23858729
Alignment:
Q  40 aactcaccggcggtaagcgacggggacgattccggcacgatattgagcgatcttaaggaacataggcatagcaagatcaaagtgaggtctaggtgggttg 139  Q
    |||| ||| ||||||||| || ||||| || || |||||||| |  || |||||||| ||||||||||||||||||||||| ||||| | ||| |||||     
T  23858571 aactaacctgcggtaagcaacagggacaataccagcacgatactcggcaatcttaagaaacataggcatagcaagatcaaaatgaggacgaggagggtta 23858670  T
Q  140 caccagccaccattgtcactaggttgagcaaaatttggagggcaaaagtttgttgcagt 198  Q
    ||||| |||||||| ||||| | |||||||||||| ||||| |||||||| || |||||    
T  23858671 caccaaccaccattatcacttgcttgagcaaaattaggaggacaaaagttagtagcagt 23858729  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 31831909 - 31832000
Alignment:
Q  269 ccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagc 360  Q
    ||||| ||||||||||||||||| |||||||| || |  || || ||||||  |||||| ||||| ||||| ||||| ||||||||||||||    
T  31831909 ccacagcttaagccattgttgaaaagtgctgtactcaaagcagcagtgtttgttccatacccttgactgtaaaggttaccatatccacaagc 31832000  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 23858788 - 23858870
Alignment:
Q  257 tcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgta 339  Q
    |||||||| || ||||| ||||| ||||||||||| |  || ||||||| |||||||||||| ||||| || ||||| |||||    
T  23858788 tcaaaacaagcaccacagcttaaaccattgttgaacaaagcagtgcttaatgctgctgtgttcactccgtaaccttgactgta 23858870  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 357
Target Start/End: Complemental strand, 11591506 - 11591406
Alignment:
Q  257 tcaaaacatgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccac 356  Q
    ||||||||||||||||| ||||| ||| |||||||||| || |||||||  || ||||||||    ||||| |||||||| || | ||||||||||||||    
T  11591506 tcaaaacatgctccacagcttaatccactgttgaatagagcagtgcttaaagcagctgtgttagtcccatacccttggctatacaagttcccatatccac 11591407  T
Q  357 a 357  Q
    |    
T  11591406 a 11591406  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 27488787 - 27488876
Alignment:
Q  268 tccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccaca 357  Q
    |||||| ||||| ||||||||||| |  || ||||||||||||||||||||   |||||| |||||||| ||||  || |||||||||||    
T  27488787 tccacagcttaaaccattgttgaacaaagcagtgcttagtgctgctgtgttggttccatatccttggctatataaatttccatatccaca 27488876  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 371
Target Start/End: Complemental strand, 42966027 - 42965925
Alignment:
Q  269 ccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcaccgcctg 368  Q
    |||||||| || ||||||||||| || || ||||||||||| || |||||   ||||||||||||||| || |  || ||||| |||||||| || ||||    
T  42966027 ccacaactcaatccattgttgaaaagagcagtgcttagtgcagcagtgttggttccatagccttggctatacaaatttccataaccacaagcccctcctg 42965928  T
Q  369 aaa 371  Q
    |||    
T  42965927 aaa 42965925  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 357
Target Start/End: Original strand, 27477562 - 27477651
Alignment:
Q  268 tccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccaca 357  Q
    |||||| ||||| ||||||||||| |  || ||||||||||||||||||||   |||||| |||||||| || |  || |||||||||||    
T  27477562 tccacagcttaaaccattgttgaacaaagcagtgcttagtgctgctgtgttggttccatatccttggctatacaaatttccatatccaca 27477651  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 3814897 - 3815005
Alignment:
Q  263 catgctccacaacttaagccattgttgaatagtgctgtgcttagtgctgctgtgtttactccatagccttggctgtataggttcccatatccacaagcac 362  Q
    ||||| |||||||| || ||||||||||||| ||| ||||| ||||||||||| ||    ||||| ||||| || || | ||| ||||||||||| ||||    
T  3814897 catgcaccacaactcaaaccattgttgaataatgcagtgctaagtgctgctgtattagtcccataaccttgactatacaagtttccatatccacatgcac 3814996  T
Q  363 cgcctgaaa 371  Q
    | |||||||    
T  3814997 cacctgaaa 3815005  T

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