View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_19 (Length: 435)
Name: NF9059_low_19
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_19 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Original strand, 16919272 - 16919678
Alignment:
| Q |
18 |
cttaccagatgcaaaagctccatcacagtttccttttatccaaccagtaattggaggattccataaaacttctttcactgttagaaactttgggggatga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16919272 |
cttaccagatgcaaaagctccatcacagtttccttttatccaaccagtaattggaggattccataaaacttctttcactgttagaaactttgggggatga |
16919371 |
T |
|
| Q |
118 |
ataaaaacattgaagcccttaagaatggagaattctctaatatcagagctagctgataaattagagttgctagcagacagagaaacatttacagtgatat |
217 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
16919372 |
ataataacattgaaacccttaagaatggagaattctctaatatcagagctagctgataagttagagttgctagcagatagggaaacatttacagtgatat |
16919471 |
T |
|
| Q |
218 |
gagatatagcactcttccaatgaatcctcctattttggaatctgcattgattcctagcataccaaatagcagaaatgatgttaacgatagcagcaataat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||| |
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| T |
16919472 |
gagatatagcactcttccaatgaatcctcctattttggaatctgcattgattcctagcgtaccaaatagcagaaataatgttaacaacagcagcaataat |
16919571 |
T |
|
| Q |
318 |
tgttaatctacattgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaa |
417 |
Q |
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|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
16919572 |
tgttaatctacactgtggagaccaacctctttcactaaggccccaaatttcttccaaagctgaaaaatgaagagattggttgagatttgaagccagccaa |
16919671 |
T |
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| Q |
418 |
caccaaa |
424 |
Q |
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||||||| |
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| T |
16919672 |
caccaaa |
16919678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 424
Target Start/End: Original strand, 14627643 - 14628039
Alignment:
| Q |
28 |
gcaaaagctccatcacagtttccttttatccaaccagtaattggaggattccataaaacttctttcactgttagaaactttgggggatgaataaaaacat |
127 |
Q |
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||||| |||||||||||||| ||||| ||||| || | |||||| ||| || | | ||||| |||||| | || |||||| | || ||||| |||||| |
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| T |
14627643 |
gcaaatgctccatcacagttacctttaatccatcctgaaattgggggactcgagatgacttccttcactataagcaactttagagggtgaattgaaacat |
14627742 |
T |
|
| Q |
128 |
tgaagcccttaagaatggagaattctctaatatcagagctagctgataaattagagttgctagcagacagagaaacatttacagtgatatgagatatagc |
227 |
Q |
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| T |
14627743 |
taaaagcctttaggatagagaattctctaatgccagaactagctgacaacttagaattacttgcagacaaagaaacattaacaatgatttgagatatgac |
14627842 |
T |
|
| Q |
228 |
actcttccaatgaatcctcctattttggaatctgcattgattcctagcataccaaatagcagaaatgatgttaacgatagcagcaataattgttaatcta |
327 |
Q |
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||| | |||||||||| |||| |||| |||||| | ||| ||||||| |||||||||||| | || |||| | | || | | || | |||| | |
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| T |
14627843 |
actttcccaatgaatcttcctgtttttgaatctataagtatttctagcattccaaatagcagagagaatattaataactgtagaagtgatagctaatgtg |
14627942 |
T |
|
| Q |
328 |
cattgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
424 |
Q |
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||||||| ||||||||||| |||| | | ||||||||| || || ||| | |||||||| |||||||||||||| ||||| | ||||||||||| |
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| T |
14627943 |
aattgaggtgaccaacctctcgcactcaaactccaaatttcctctaaagctaagaaatgaagggattggttgagaatagaagccaaccaacaccaaa |
14628039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 424
Target Start/End: Complemental strand, 189740 - 189344
Alignment:
| Q |
28 |
gcaaaagctccatcacagtttccttttatccaaccagtaattggaggattccataaaacttctttcactgttagaaactttgggggatgaataaaaacat |
127 |
Q |
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||||| |||||||||||||| ||||| ||||| || | |||||| ||| || | | ||||| |||||| | || |||||| | || ||||| |||||| |
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| T |
189740 |
gcaaatgctccatcacagttacctttaatccatcctgaaattgggggactcgagatgacttccttcactataagcaactttagagggtgaattgaaacat |
189641 |
T |
|
| Q |
128 |
tgaagcccttaagaatggagaattctctaatatcagagctagctgataaattagagttgctagcagacagagaaacatttacagtgatatgagatatagc |
227 |
Q |
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| T |
189640 |
taaaagcctttaggatagagaattctctaatgccagaactagctgacaacttagaattacttgcagacaaagaaacattaacaatgatttgagatatgac |
189541 |
T |
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| Q |
228 |
actcttccaatgaatcctcctattttggaatctgcattgattcctagcataccaaatagcagaaatgatgttaacgatagcagcaataattgttaatcta |
327 |
Q |
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||| | |||||||||| |||| |||| |||||| | ||| ||||||| |||||||||||| | || |||| | | || | | || | |||| | |
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| T |
189540 |
actttcccaatgaatcttcctgtttttgaatctataagtatttctagcattccaaatagcagagagaatattaataactgtagaagtgatagctaatgtg |
189441 |
T |
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| Q |
328 |
cattgaggagaccaacctcttccactaaggccccaaatttcttccaacgctgaaaaatgaagagattggttgagaattgaagcaagccaacaccaaa |
424 |
Q |
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||||||| ||||||||||| |||| | | ||||||||| || || ||| | |||||||| |||||||||||||| ||||| | ||||||||||| |
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| T |
189440 |
aattgaggtgaccaacctctcgcactcaaactccaaatttcctctaaagctaagaaatgaagggattggttgagaatagaagccaaccaacaccaaa |
189344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 11403889 - 11403848
Alignment:
| Q |
18 |
cttaccagatgcaaaagctccatcacagtttccttttatcca |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11403889 |
cttaccagatgcaaaagctccatcacagtttccttttatcca |
11403848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 31437943 - 31437999
Alignment:
| Q |
18 |
cttaccagatgcaaaagctccatcacagtttccttttatccaaccagtaattggagg |
74 |
Q |
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||||||||||||||| ||||||||||| || || |||||||||| || |||| |||| |
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| T |
31437943 |
cttaccagatgcaaatgctccatcacaattaccctttatccaacaagcaatttgagg |
31437999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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