View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9059_low_2 (Length: 1245)

Name: NF9059_low_2
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9059_low_2
NF9059_low_2
[»] chr3 (17 HSPs)
chr3 (154-507)||(6077194-6077548)
chr3 (977-1153)||(54153848-54154025)
chr3 (966-1144)||(47510714-47510893)
chr3 (972-1138)||(32375193-32375361)
chr3 (969-1138)||(4195303-4195473)
chr3 (968-1144)||(44765240-44765417)
chr3 (19-130)||(6077566-6077677)
chr3 (965-1123)||(42005316-42005474)
chr3 (972-1116)||(3432586-3432730)
chr3 (420-501)||(53161627-53161710)
chr3 (1008-1115)||(25118591-25118694)
chr3 (973-1039)||(9248375-9248441)
chr3 (1020-1113)||(42426226-42426318)
chr3 (1011-1138)||(51312863-51312991)
chr3 (457-505)||(54079269-54079319)
chr3 (458-505)||(51422963-51423014)
chr3 (967-1048)||(50958615-50958696)
[»] chr8 (17 HSPs)
chr8 (964-1233)||(41168505-41168776)
chr8 (628-909)||(41168831-41169116)
chr8 (973-1144)||(27982289-27982457)
chr8 (973-1144)||(28039591-28039759)
chr8 (967-1138)||(22488764-22488942)
chr8 (504-575)||(41169161-41169232)
chr8 (965-1153)||(12956214-12956399)
chr8 (967-1115)||(31505501-31505649)
chr8 (1012-1110)||(44167166-44167265)
chr8 (965-1124)||(29374496-29374659)
chr8 (458-505)||(44970841-44970890)
chr8 (442-502)||(8226724-8226786)
chr8 (968-1086)||(8488605-8488727)
chr8 (1052-1143)||(16345979-16346070)
chr8 (1001-1078)||(3423746-3423824)
chr8 (458-505)||(29642445-29642494)
chr8 (458-505)||(29781134-29781183)
[»] chr6 (21 HSPs)
chr6 (977-1147)||(29694283-29694454)
chr6 (388-506)||(7367874-7367997)
chr6 (1002-1125)||(1407313-1407434)
chr6 (974-1138)||(27673653-27673817)
chr6 (1002-1148)||(7592729-7592877)
chr6 (420-505)||(14600277-14600364)
chr6 (438-500)||(895630-895695)
chr6 (1001-1118)||(23131435-23131553)
chr6 (1005-1071)||(28985478-28985544)
chr6 (442-504)||(23097030-23097094)
chr6 (452-505)||(31575107-31575162)
chr6 (458-502)||(20014729-20014775)
chr6 (968-1113)||(2838969-2839114)
chr6 (993-1035)||(6454540-6454582)
chr6 (417-496)||(8849791-8849872)
chr6 (420-505)||(14309272-14309360)
chr6 (458-505)||(17097531-17097580)
chr6 (458-505)||(21686110-21686159)
chr6 (458-505)||(23158117-23158166)
chr6 (226-274)||(7463745-7463794)
chr6 (442-504)||(22294051-22294115)
[»] chr4 (29 HSPs)
chr4 (975-1143)||(37626694-37626863)
chr4 (968-1134)||(41259980-41260147)
chr4 (967-1115)||(53654263-53654412)
chr4 (968-1138)||(33395304-33395475)
chr4 (1005-1143)||(41163046-41163185)
chr4 (970-1143)||(11086241-11086418)
chr4 (996-1109)||(14124199-14124313)
chr4 (988-1112)||(37858193-37858319)
chr4 (388-469)||(51033231-51033313)
chr4 (1001-1118)||(52837939-52838057)
chr4 (968-1138)||(16502386-16502556)
chr4 (967-1138)||(2392558-2392730)
chr4 (1002-1101)||(48497420-48497520)
chr4 (964-1124)||(388359-388521)
chr4 (1001-1116)||(21865192-21865307)
chr4 (1001-1116)||(21921053-21921168)
chr4 (1002-1083)||(32906144-32906226)
chr4 (1048-1113)||(37645330-37645393)
chr4 (438-505)||(51036012-51036085)
chr4 (995-1118)||(35827747-35827870)
chr4 (993-1083)||(54335182-54335273)
chr4 (457-505)||(13759595-13759645)
chr4 (458-505)||(581435-581484)
chr4 (973-1046)||(48582157-48582231)
chr4 (452-505)||(581742-581797)
chr4 (964-1138)||(35422384-35422559)
chr4 (999-1041)||(18094485-18094527)
chr4 (996-1077)||(34341419-34341501)
chr4 (458-505)||(35579447-35579496)
[»] chr7 (17 HSPs)
chr7 (986-1122)||(40019462-40019598)
chr7 (973-1138)||(23070192-23070362)
chr7 (966-1143)||(22680693-22680872)
chr7 (967-1145)||(31860249-31860428)
chr7 (973-1143)||(25240250-25240421)
chr7 (388-501)||(26643043-26643160)
chr7 (388-505)||(45623321-45623443)
chr7 (969-1078)||(31245262-31245372)
chr7 (1001-1110)||(7833524-7833637)
chr7 (1055-1115)||(46302890-46302950)
chr7 (1034-1116)||(3338451-3338534)
chr7 (967-1115)||(2256419-2256567)
chr7 (968-1047)||(46302505-46302584)
chr7 (1063-1119)||(11907277-11907333)
chr7 (457-505)||(1725864-1725914)
chr7 (417-505)||(1970443-1970533)
chr7 (450-505)||(39700510-39700567)
[»] chr5 (28 HSPs)
chr5 (969-1144)||(7736271-7736447)
chr5 (968-1144)||(30251920-30252097)
chr5 (967-1118)||(25731186-25731339)
chr5 (973-1143)||(42641090-42641260)
chr5 (968-1143)||(1637944-1638119)
chr5 (971-1066)||(1042044-1042140)
chr5 (967-1111)||(10511066-10511210)
chr5 (420-497)||(4001442-4001521)
chr5 (978-1084)||(1041932-1042038)
chr5 (1001-1139)||(14156966-14157105)
chr5 (1002-1143)||(31112387-31112529)
chr5 (442-505)||(42880087-42880152)
chr5 (996-1124)||(33085274-33085403)
chr5 (458-506)||(41612837-41612887)
chr5 (965-1047)||(1447619-1447701)
chr5 (965-1027)||(20078351-20078413)
chr5 (458-505)||(35332611-35332660)
chr5 (728-806)||(40995302-40995380)
chr5 (996-1099)||(10418595-10418699)
chr5 (993-1116)||(26402002-26402126)
chr5 (973-1083)||(34596541-34596650)
chr5 (1011-1113)||(4858078-4858180)
chr5 (767-798)||(19214076-19214107)
chr5 (457-505)||(23196123-23196175)
chr5 (1052-1143)||(35626642-35626733)
chr5 (418-476)||(21126534-21126592)
chr5 (463-505)||(19832214-19832258)
chr5 (226-274)||(21126308-21126357)
[»] scaffold0007 (1 HSPs)
scaffold0007 (969-1112)||(246512-246656)
[»] chr2 (22 HSPs)
chr2 (967-1113)||(31915043-31915190)
chr2 (968-1120)||(31921207-31921359)
chr2 (972-1123)||(8033260-8033410)
chr2 (969-1111)||(38373335-38373478)
chr2 (996-1116)||(31598032-31598154)
chr2 (973-1071)||(35005195-35005294)
chr2 (1001-1110)||(2396688-2396798)
chr2 (995-1143)||(16209785-16209934)
chr2 (1063-1143)||(37519638-37519717)
chr2 (1048-1143)||(8793859-8793954)
chr2 (970-1111)||(12800755-12800896)
chr2 (965-1026)||(14845960-14846021)
chr2 (1063-1115)||(14845860-14845911)
chr2 (965-1030)||(37519762-37519829)
chr2 (1052-1143)||(168718-168808)
chr2 (968-1007)||(17074464-17074503)
chr2 (446-504)||(24069869-24069930)
chr2 (427-505)||(25423731-25423812)
chr2 (458-505)||(23463744-23463793)
chr2 (999-1041)||(37852090-37852132)
chr2 (458-505)||(44923875-44923924)
chr2 (457-505)||(29464233-29464284)
[»] chr1 (15 HSPs)
chr1 (971-1091)||(8772420-8772541)
chr1 (980-1117)||(12188616-12188754)
chr1 (1002-1143)||(44603632-44603774)
chr1 (967-1143)||(26701496-26701673)
chr1 (973-1143)||(4448977-4449149)
chr1 (973-1116)||(2193263-2193407)
chr1 (967-1118)||(42723900-42724054)
chr1 (996-1083)||(7330541-7330629)
chr1 (973-1086)||(4489294-4489409)
chr1 (1093-1143)||(4489012-4489062)
chr1 (458-504)||(15718773-15718821)
chr1 (458-501)||(2251025-2251069)
chr1 (458-505)||(15847411-15847460)
chr1 (442-497)||(42955771-42955828)
chr1 (1023-1091)||(38889313-38889382)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1005-1144)||(83504-83644)
[»] scaffold0214 (2 HSPs)
scaffold0214 (457-505)||(11572-11622)
scaffold0214 (457-505)||(25872-25922)
[»] scaffold0164 (2 HSPs)
scaffold0164 (438-505)||(33847-33916)
scaffold0164 (446-505)||(6152-6214)
[»] scaffold0566 (1 HSPs)
scaffold0566 (418-505)||(5129-5220)
[»] scaffold0061 (2 HSPs)
scaffold0061 (458-505)||(1645-1694)
scaffold0061 (458-505)||(7156-7205)
[»] scaffold0022 (1 HSPs)
scaffold0022 (450-501)||(152910-152963)
[»] scaffold0537 (1 HSPs)
scaffold0537 (457-505)||(11315-11366)
[»] scaffold0305 (1 HSPs)
scaffold0305 (458-506)||(885-936)
[»] scaffold0179 (1 HSPs)
scaffold0179 (457-505)||(4726-4777)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 154 - 507
Target Start/End: Complemental strand, 6077548 - 6077194
Alignment:
Q  154 tataaggaagaaagtcattggaaggaacgcatagccttgtaagttgtaaaggcctgaaagatgcacacatgtagtgagcaagcatgactttaaatttaat 253  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  6077548 tataaagaagaaagtcattggaaggaacgcatagccttgtaagttgtaaaggcctgaaagctgcacgcatgtagtgagcaagcatgactttaaatttaat 6077449  T
Q  254 gggaaggtaagaatatcaatggnnnnnnntggtgctactgaaaaaa-tggtaaaggggaaattgtggcagaatgttgtaatggaaaggagattgtaaggg 352  Q
    |||||||||| |||||||||||       ||||||||||||||||| ||||| |  | ||||||||||||||||||||||||||||||||||||||||||    
T  6077448 gggaaggtaataatatcaatggaatgaaatggtgctactgaaaaaaatggtagaatgaaaattgtggcagaatgttgtaatggaaaggagattgtaaggg 6077349  T
Q  353 aaagaagttatattttgattttcaaacatggttatgtaaccaacttcacttttaaccgtttatattatggaatatttgcaattaattaggggtaaaatag 452  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6077348 aaagaagttatattttgattttcaaacatggtaatgtaaccaacttaacttttaaccgtttatattatggaatatttgcaattaattaggggtaaaatag 6077249  T
Q  453 gaaataaaataggctacaccaaaaatgtattgcctttattaataggtatagatgt 507  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  6077248 gaaataaaataggctagaccaaaaatgtattgcatttattaataggtatagatgt 6077194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 977 - 1153
Target Start/End: Original strand, 54153848 - 54154025
Alignment:
Q  977 ctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtat 1075  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||| | ||||  ||| ||||| |||| |||||||||||||    
T  54153848 ctaaccattgcccttggggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtttaatcattgataagaaaaaagtaaagacttgtat 54153947  T
Q  1076 ttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaatacccaaaagttaaa 1153  Q
    ||||| ||||| |||| ||||||||||||| ||||||| |||| ||||| | ||||||||||| |||||||| |||||    
T  54153948 ttccatgacaaagtttttattaatggaatctttaaccactgcccttagggcactggttagcaagacccaaaatttaaa 54154025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 966 - 1144
Target Start/End: Original strand, 47510714 - 47510893
Alignment:
Q  966 taaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaata 1064  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||| || ||||| || ||||||| ||| ||||| ||||| |    
T  47510714 taaggagaatgctaaccattacctttggggcattgattaaagtactaaaataagtaagtttgtatcgaaaaatggtgtaattattgttaagaaaaaaaca 47510813  T
Q  1065 aagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    |||| ||||||||||||||||  |||| ||||||||||||| | || ||||||||||||| | ||||||||||| |||||    
T  47510814 aagatttgtatttccaagacatagtttctattaatggaatcatcaatcattgcctttagggcactggttagcaagaccca 47510893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 972 - 1138
Target Start/End: Complemental strand, 32375361 - 32375193
Alignment:
Q  972 gaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaag-acaaaaataaagac 1069  Q
    |||| |||||||||||  || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| | ||||||||| ||    
T  32375361 gaatactaaccattgctcttggggcattagttaaagtactaaaataagtaagttagcattgaaaagtggtgtaattattgctaagaaaaaaaataaatac 32375262  T
Q  1070 ttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    ||| |||| ||||||||  ||  |||||||||||||||||||||||||| ||||| | |||||||||||    
T  32375261 ttgaattttcaagacaaaattcttattaatggaatccttaaccattgcccttagggcactggttagcaa 32375193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 969 - 1138
Target Start/End: Complemental strand, 4195473 - 4195303
Alignment:
Q  969 ggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattttgctaag-acaaaaataaag 1067  Q
    |||||||||||||||||||  || ||||||| ||||||||||||||||||||||||||||||  |||| || ||||||||||||||| | |||| |||||    
T  4195473 ggagaatgctaaccattgctcttggggcattggttaaagtactaaaataagtaagtttgcataaaaaaatggtgtaattttgctaagaagaaaagtaaag 4195374  T
Q  1068 acttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    | |||||||||||| ||||  ||  |||||||||||||||||||||||||| ||| | | |||||||||||    
T  4195373 aattgtatttccaaaacaaaattactattaatggaatccttaaccattgcccttaaggcactggttagcaa 4195303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 968 - 1144
Target Start/End: Complemental strand, 44765417 - 44765240
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    ||||||||| ||||||||   ||| ||| |||  |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| | || ||||    
T  44765417 aggagaatgttaaccattatttttggggtattgattaaagtattaaaataagtaagtttgcattgaaaagtggtgtaattattgctaagaaataagtaaa 44765318  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    ||||||||||||||| |||| ||||  |||| ||||||||||||||| |||| ||||| | |||||||||||||||||    
T  44765317 gacttgtatttccaaaacaaagtttccattattggaatccttaaccactgcccttagggcactggttagcaataccca 44765240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 6077677 - 6077566
Alignment:
Q  19 caagtataaaaaagctgatgattccttnnnnnnnnctgatgattgaaataaaatcgtcattgttttattttgagatagaaattgagagagataatataag 118  Q
    |||||||||||||| ||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6077677 caagtataaaaaagttgatgattccttaaaaaaaactaatgattgaaataaaatcgtcattgttttattttgagatagaaattgagagagataatataag 6077578  T
Q  119 agaattcttcac 130  Q
    ||||||||||||    
T  6077577 agaattcttcac 6077566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 965 - 1123
Target Start/End: Original strand, 42005316 - 42005474
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaat 1063  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||||  |||| || | ||||| ||| ||||| |||| |    
T  42005316 ttaaggagaatgcta-ccattgccttttgggcattggttaaagtactacaataagtaagtttgcatctaaaaatggtctaattattgttaagaaaaaagt 42005414  T
Q  1064 aaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttag 1123  Q
    ||||| |||||||| ||| | ||  ||| |||||||||||||||||||||||||| ||||    
T  42005415 aaagatttgtattttcaatataaaatttctattaatggaatccttaaccattgcccttag 42005474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 972 - 1116
Target Start/End: Original strand, 3432586 - 3432730
Alignment:
Q  972 gaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagact 1070  Q
    ||||||||||||||  ||| |||  ||| |||||||||||||||||| |||||||||||  |||| |||||||||| |||||||||  ||| |||| |||    
T  3432586 gaatgctaaccattatcttgaggt-attggttaaagtactaaaataaataagtttgcatcaaaaaatgatgtaattattgctaagaacaaagtaaacact 3432684  T
Q  1071 tgtatttccaagacaatgtttatattaatggaatccttaaccattg 1116  Q
    | ||||| ||||| || |||| ||||||||||||| ||||||||||    
T  3432685 tatattttcaagataaagtttctattaatggaatcattaaccattg 3432730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 420 - 501
Target Start/End: Original strand, 53161627 - 53161710
Alignment:
Q  420 tggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtat 501  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  |||||  |||  || |||||||||||||||||||||||    
T  53161627 tggaatatttgcaattaattaggggtaaaataggaaagaaaataaactacattaaaagaaagtattgcctttattaataggtat 53161710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1008 - 1115
Target Start/End: Complemental strand, 25118694 - 25118591
Alignment:
Q  1008 tactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatcc 1106  Q
    |||||||||||||||||||||||||||||||| ||||||  ||||||||| |||| ||||     |||||||||||||||  ||| |||||||||||| |    
T  25118694 tactaaaataagtaagtttgcattgaaaagtggtgtaatcattgctaagaaaaaagtaaa-----gtatttccaagacaaaatttttattaatggaatac 25118600  T
Q  1107 ttaaccatt 1115  Q
    |||| ||||    
T  25118599 ttaatcatt 25118591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 973 - 1039
Target Start/End: Original strand, 9248375 - 9248441
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtg 1039  Q
    ||||||||||||| ||||| ||||||| ||||||||| |||||||| ||||||||||| ||||||||    
T  9248375 aatgctaaccattacctttggggcattggttaaagtattaaaataaataagtttgcatcgaaaagtg 9248441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1020 - 1113
Target Start/End: Original strand, 42426226 - 42426318
Alignment:
Q  1020 taagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaacca 1113  Q
    |||||||||||  ||||||| ||||||| ||| ||||||||||||||| |||| ||||||||||||||  ||| |||||||||| | ||||||||    
T  42426226 taagtttgcataaaaaagtggtgtaattattgttaagacaaaaataaaaacttatatttccaagacaa--tttttattaatggatttcttaacca 42426318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1011 - 1138
Target Start/End: Complemental strand, 51312991 - 51312863
Alignment:
Q  1011 taaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatcctta 1109  Q
    |||||| |||||||||||||  ||||||| | | ||| || | ||||||||||||||  ||| ||||| ||||| ||  ||||||||| |||| ||||||    
T  51312991 taaaattagtaagtttgcatcaaaaagtggtatgattattaccaagacaaaaataaaagcttatattttcaagataaaatttatattagtggattcctta 51312892  T
Q  1110 accattgcctttaggactctggttagcaa 1138  Q
    || |||||| ||||||| || ||||||||    
T  51312891 actattgcccttaggacactagttagcaa 51312863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 54079269 - 54079319
Alignment:
Q  457 taaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    |||||||||||||||||||  ||||||||| |||||||||||| |||||||    
T  54079269 taaaataggctacaccaaataaatgtattgtctttattaatagatatagat 54079319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 51423014 - 51422963
Alignment:
Q  458 aaaataggctacaccaaa----aatgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||    || |||||||||||||||||||||||||||    
T  51423014 aaaataggctacaccaaacccaaaagtattgcctttattaataggtatagat 51422963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 967 - 1048
Target Start/End: Original strand, 50958615 - 50958696
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattt 1048  Q
    |||||||||| |||||| || | ||||  |||| |||||||||| ||||||||||| |||||| | ||||||  ||||||||    
T  50958615 aaggagaatgttaaccaatgtccttagaacatttgttaaagtaccaaaataagtaattttgcaataaaaagttgtgtaattt 50958696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 205; Significance: 1e-111; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 964 - 1233
Target Start/End: Complemental strand, 41168776 - 41168505
Alignment:
Q  964 gttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt--ttgctaagacaaaa 1061  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  41168776 gttaaggagaatgttaaccattgcccttaggatattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattatttgctaagacaaaa 41168677  T
Q  1062 ataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaatacccaaaagttaaacatggttt 1161  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||| || ||||||||||||||| |||||||||||||  |||    
T  41168676 gtaaagacttgtatttccaagacaatgtttttattaatggaatccttaaccattatctttagaacactggttagcaatacctaaaagttaaacataattt 41168577  T
Q  1162 aggtaaagagaactaacaactttaattaacattctaataaggaagctacattcttgttttcggagaataatc 1233  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41168576 aggtaaagagaattaacaactttaattaacattctaataaggaagctacattcttgttttcggagaataatc 41168505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 628 - 909
Target Start/End: Complemental strand, 41169116 - 41168831
Alignment:
Q  628 atttaaaaattattctcctttttgacctttgggacatcaatttacaaaattaaatgtacttttgtcctctgatatttgggtaaattttggtttacccttt 727  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  41169116 atttaaaaattattctcctttttgacctttgggacatcaatttataaaattaaatgtacttttgtcctctgacatttgggtaaatttcggtttactcttt 41169017  T
Q  728 tgccaca-----tcatatgttttgtgcagttaaatttcacaaaagtctaaaatcaaataatctttaaattataagactggaatcccagaataatttttta 822  Q
    |||||||     |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||    
T  41169016 tgccacaccacatcatatattttgtgcagttaaatttcacaaaggtctaaaatcaaataatctttaaattataagattgaaatcctagaataatttttta 41168917  T
Q  823 aatggggataaatcataattccctcaaatgtcaggagggaaaagtgcatttaatccttcattaaataaatggtggaccataaccatg 909  Q
    |||||| |||||||||||||| |||||||| || |  ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41168916 aatgggaataaatcataattcactcaaatgacaag-cggaaaagggcatttaatccttcattaaataaatggtggaccataaccatg 41168831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 973 - 1144
Target Start/End: Original strand, 27982289 - 27982457
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagactt 1071  Q
    |||| ||||||||||| || ||||||| |||||||||||||||||||||||||||    |||||||| ||||||  || |||||| |||| |||||||||    
T  27982289 aatgttaaccattgcccttggggcattggttaaagtactaaaataagtaagtttg----gaaaagtggtgtaatcattactaagaaaaaagtaaagactt 27982384  T
Q  1072 gtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||| ||||| | ||||||||||| |||||    
T  27982385 gtatttccaagacaaagtttctattaatggaatccttaatcattgcccttagggcactggttagcaagaccca 27982457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 973 - 1144
Target Start/End: Original strand, 28039591 - 28039759
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagactt 1071  Q
    |||| ||||||||||| || ||||||| |||||||||||||||||||||||||||    |||||||| ||||||  || |||||| |||| |||||||||    
T  28039591 aatgttaaccattgcccttggggcattggttaaagtactaaaataagtaagtttg----gaaaagtggtgtaatcattactaagaaaaaagtaaagactt 28039686  T
Q  1072 gtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||| ||||| | ||||||||||| |||||    
T  28039687 gtatttccaagacaaagtttctattaatggaatccttaatcattgcccttagggcactggttagcaagaccca 28039759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 967 - 1138
Target Start/End: Original strand, 22488764 - 22488942
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaa------gtgatgtaa-ttttgctaagacaa 1059  Q
    |||||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||| ||| |||||      |||  |||| | ||||||||| ||    
T  22488764 aaggagaatgctaaccattgcccttggggcattggttaaagtacttaaataagtaagtttacatcgaaaagtgggggtggggtaactattgctaagaaaa 22488863  T
Q  1060 aaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    || | || |||||||||||||| |||| |||| ||||||||||||||||||||||| || ||||| | |||||||||||    
T  22488864 aagtgaaaacttgtatttccaaaacaaagtttctattaatggaatccttaaccattacccttagggcactggttagcaa 22488942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 504 - 575
Target Start/End: Complemental strand, 41169232 - 41169161
Alignment:
Q  504 atgtgttgcaggttgggctagtgatgcattttatttttgggtctgaatttcgatttactccttgtaaattaa 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41169232 atgtgttgcaggttgggctagtgatgcattttatttttgggtctgaatttcgatttacttcttgtaaattaa 41169161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 965 - 1153
Target Start/End: Original strand, 12956214 - 12956399
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaat 1063  Q
    |||||||||||| |||||||| |  || ||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||  ||||||||| ||||||    
T  12956214 ttaaggagaatgttaaccattactcttggggcattggttaaagtactaaagtaagtaagtttgcatcgaaaattggtgtaatcattgctaaga-aaaaat 12956312  T
Q  1064 aaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaatacccaaaagttaaa 1153  Q
    ||||| |||||||||||  |||  |||| |||||||||||||||||| ||||||  ||| ||| ||||||||||| |||| ||| |||||    
T  12956313 aaagaattgtatttcca--acatagtttttattaatggaatccttaatcattgctctta-gacactggttagcaaaaccctaaaattaaa 12956399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 967 - 1115
Target Start/End: Original strand, 31505501 - 31505649
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    ||||||||||||||| |||| ||||| |||||| ||||||||| |||||||||||| |||| ||| |||| | |||||||| ||| |||||||||| |||    
T  31505501 aaggagaatgctaacaattgtctttaaggcattggttaaagtattaaaataagtaaatttgtatt-aaaaataatgtaattattgttaagacaaaagtaa 31505599  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaaccatt 1115  Q
    ||||| ||||||| |||||||| ||| |||||| ||||||||||| ||||    
T  31505600 agactggtatttctaagacaatatttctattaacggaatccttaatcatt 31505649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 1012 - 1110
Target Start/End: Complemental strand, 44167265 - 44167166
Alignment:
Q  1012 aaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaa 1110  Q
    ||||||||||||||||||| |||||||  ||||||  ||||||||| |||| |||||| ||||||||||||||||| |||| ||||||| ||||| ||||    
T  44167265 aaaataagtaagtttgcatcgaaaagttgtgtaatcattgctaagaaaaaagtaaagatttgtatttccaagacaaagtttctattaatagaatcattaa 44167166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 965 - 1124
Target Start/End: Complemental strand, 29374659 - 29374496
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaat 1063  Q
    |||| ||||||||||||||||  | ||  | |||| ||||||||| |||||||||||| ||| ||| |||||||| ||||||| ||||||||| ||||||    
T  29374659 ttaaagagaatgctaaccattatccttgagacattggttaaagtagtaaaataagtaaatttacatcgaaaagtggtgtaattattgctaaga-aaaaat 29374561  T
Q  1064 aaagacttg-tatttccaagacaatgtttatattaatg---gaatccttaaccattgcctttagg 1124  Q
    ||||||||| |||| ||| ||||| |||| ||||||||    |||| ||||||||| ||||||||    
T  29374560 aaagacttgttattaccatgacaaagtttctattaatgataaaatctttaaccattacctttagg 29374496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 44970841 - 44970890
Alignment:
Q  458 aaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  44970841 aaaataggctacaccaaaagcatgtattgcctttattaataggtatagat 44970890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 442 - 502
Target Start/End: Original strand, 8226724 - 8226786
Alignment:
Q  442 gggtaaaataggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtata 502  Q
    |||||||||||| |  ||||||||||||| ||||  |||||||||||||||||||||||||||    
T  8226724 gggtaaaataggtaggaaaataggctacatcaaagcaatgtattgcctttattaataggtata 8226786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 968 - 1086
Target Start/End: Original strand, 8488605 - 8488727
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataa-gtaagtttgcattgaaaagtgatgtaatt-ttgctaaga--caaaaat 1063  Q
    |||| ||||||||| | |||| || ||||||| |||||||| ||||||||| |||||||||| |  ||||||| | ||||| |||||||||  ||||| |    
T  8488605 aggaaaatgctaacgagtgcccttggggcattggttaaagttctaaaataaagtaagtttgcctcaaaaagtggtataattattgctaagagtcaaaagt 8488704  T
Q  1064 aaagacttgtatttccaagacaa 1086  Q
     || |||||||||||||||||||    
T  8488705 caaaacttgtatttccaagacaa 8488727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1052 - 1143
Target Start/End: Complemental strand, 16346070 - 16345979
Alignment:
Q  1052 taagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    ||||| ||||||||| |||| ||||| ||||||||  ||| |||||| ||| | ||| |||| |||||||||||| || |||||||| ||||    
T  16346070 taagaaaaaaataaaaacttatattttcaagacaaaatttttattaaaggattacttgaccaatgcctttaggacacttgttagcaaaaccc 16345979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1001 - 1078
Target Start/End: Original strand, 3423746 - 3423824
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttc 1078  Q
    |||||||||||||||||||||| |||| |   |||| |  ||||||| ||||||||||||||||||| ||||| |||||    
T  3423746 gttaaagtactaaaataagtaattttgtaactaaaacttgtgtaattattgctaagacaaaaataaaaacttgcatttc 3423824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 29642445 - 29642494
Alignment:
Q  458 aaaataggctacaccaaaaa--tgtattgcctttattaataggtatagat 505  Q
    |||| |||||||||||||||  ||||||| ||||||||||||||||||||    
T  29642445 aaaaaaggctacaccaaaaacatgtattgtctttattaataggtatagat 29642494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 29781183 - 29781134
Alignment:
Q  458 aaaataggctacaccaaaaat--gtattgcctttattaataggtatagat 505  Q
    |||| |||||||||||||||   |||||||||||||||||||||||||||    
T  29781183 aaaaaaggctacaccaaaaaatagtattgcctttattaataggtatagat 29781134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 3e-51; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 977 - 1147
Target Start/End: Original strand, 29694283 - 29694454
Alignment:
Q  977 ctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtat 1075  Q
    |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  29694283 ctaaccattgcccttaggacattggttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattattgttaagacaaaaataaaaacttgtat 29694382  T
Q  1076 ttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaatacccaaaa 1147  Q
    |||||||| ||| ||| ||||||| |||||||||||||||| | ||| ||| || |||||||| ||||||||    
T  29694383 ttccaagataatatttctattaatagaatccttaaccattgtccttaagacactagttagcaagacccaaaa 29694454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 388 - 506
Target Start/End: Complemental strand, 7367997 - 7367874
Alignment:
Q  388 gtaaccaacttcacttttaaccgtttatat---tatggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaa--aatgtat 482  Q
    ||||||||||||||||  ||| |||||| |   | ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||  || ||||    
T  7367997 gtaaccaacttcacttcaaacagtttatttgtttttggaatatttgcaattaattaggggtaaaataggaaagaaaataggctacaacaaaagaaagtat 7367898  T
Q  483 tgcctttattaataggtatagatg 506  Q
    ||||||||||||||||||||||||    
T  7367897 tgcctttattaataggtatagatg 7367874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 1002 - 1125
Target Start/End: Complemental strand, 1407434 - 1407313
Alignment:
Q  1002 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatg 1100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||| |||||||  ||||||  |||| || |||||    
T  1407434 ttaaagtactaaaataagtaagtttgcatcgaaaagtgatgtaattattactaaga-aaaaataaagacatgtatttttaagaca--gtttctaataatg 1407338  T
Q  1101 gaatccttaaccattgcctttagga 1125  Q
     |||| |||||||||||| ||||||    
T  1407337 aaatcattaaccattgcccttagga 1407313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 974 - 1138
Target Start/End: Complemental strand, 27673817 - 27673653
Alignment:
Q  974 atgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttg 1072  Q
    ||||||||||||||| |||  ||||| |||||| || ||||||||||||||||  || ||| |||| | ||||| ||||||||  |||||||||||||||    
T  27673817 atgctaaccattgcccttaaagcattggttaaattagtaaaataagtaagtttatatcgaagagtggt-taattattgctaagcaaaaaataaagacttg 27673719  T
Q  1073 tatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    ||||||||||||||  ||| || |||||||||| |||| ||||||| ||||| | | |||||||||    
T  27673718 tatttccaagacaacatttctagtaatggaatctttaatcattgcccttagggcaccggttagcaa 27673653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1002 - 1148
Target Start/End: Original strand, 7592729 - 7592877
Alignment:
Q  1002 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatg 1100  Q
    |||||||| ||||||||||||||||  ||| ||||||||||||||| |||||| ||||| | |||| ||||||||||  || |||| || | |||||||     
T  7592729 ttaaagtattaaaataagtaagtttaaattaaaaagtgatgtaattattgctaggacaagagtaaaaacttgtatttttaaaacaaagtgtctattaata 7592828  T
Q  1101 gaatccttaa-ccattgcctttaggactctggttagcaatacccaaaag 1148  Q
    ||||| |||| | |  ||| ||||||| |||||||| || |||||||||    
T  7592829 gaatctttaatcaaacgcccttaggacactggttagtaaaacccaaaag 7592877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 14600364 - 14600277
Alignment:
Q  420 tggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    ||||||||||| ||| ||| |||||||||||||| || |||| |||||||||||||  ||||| || ||||||||||||| |||||||    
T  14600364 tggaatatttgtaataaatgaggggtaaaataggtaaaaaaaaaggctacaccaaaacaatgttttccctttattaatagttatagat 14600277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 438 - 500
Target Start/End: Original strand, 895630 - 895695
Alignment:
Q  438 ttaggggtaaaataggaaataaaataggctacaccaa---aaatgtattgcctttattaataggta 500  Q
    ||||||||||||||||||| |||||||||||||||||   ||| ||||| ||||||||||||||||    
T  895630 ttaggggtaaaataggaaaaaaaataggctacaccaaaataaaagtattacctttattaataggta 895695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1001 - 1118
Target Start/End: Complemental strand, 23131553 - 23131435
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaat 1099  Q
    |||||||||||||||||||||| |||||| | ||||||   |||||| ||||||| |||||| |||| | || ||||| |||||||| |||| || ||||    
T  23131553 gttaaagtactaaaataagtaattttgcaataaaaagttgcgtaattattgctaaaacaaaagtaaaaatttatattttcaagacaaagtttctactaat 23131454  T
Q  1100 ggaatccttaaccattgcc 1118  Q
    ||| |||||| ||| ||||    
T  23131453 ggattccttatccaatgcc 23131435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1005 - 1071
Target Start/End: Complemental strand, 28985544 - 28985478
Alignment:
Q  1005 aagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagactt 1071  Q
    ||||| ||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||| ||||    
T  28985544 aagtattaaaataagtaagtttgca-tcaaaagtgatgtaattattgctgagacaaaaataaaaactt 28985478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 442 - 504
Target Start/End: Original strand, 23097030 - 23097094
Alignment:
Q  442 gggtaaaataggaaataaaataggctacaccaaaa--atgtattgcctttattaataggtataga 504  Q
    ||||||| |||| || |||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  23097030 gggtaaagtaggcaaaaaaataggctacaccaaaatcaagtattgcctttattaatagttataga 23097094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 31575107 - 31575162
Alignment:
Q  452 ggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    ||||| ||||||||||||| ||||  || |||||||||||||||||||||||||||    
T  31575107 ggaaagaaaataggctacatcaaaccaaagtattgcctttattaataggtatagat 31575162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 458 - 502
Target Start/End: Complemental strand, 20014775 - 20014729
Alignment:
Q  458 aaaataggctacaccaaa--aatgtattgcctttattaataggtata 502  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||    
T  20014775 aaaataggctacaccaaacaaaagtattgcctttattaataggtata 20014729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 968 - 1113
Target Start/End: Original strand, 2838969 - 2839114
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    |||||||||||||  | ||||||| | ||||| |||||  |  |||||| |||||||||||||  ||||||| |||| || |||| || |||||| ||||    
T  2838969 aggagaatgctaatgagtgcctttggagcattggttaagttcttaaaattagtaagtttgcatcaaaaagtggtgtagttattgc-aaaacaaaagtaaa 2839067  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaacca 1113  Q
     | || ||||| |||||||| |||| || ||||||| ||||||||||    
T  2839068 aatttatattttcaagacaaagtttctactaatggattccttaacca 2839114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 993 - 1035
Target Start/End: Original strand, 6454540 - 6454582
Alignment:
Q  993 gggcattagttaaagtactaaaataagtaagtttgcattgaaa 1035  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||    
T  6454540 gggcattggttaaaatactaaaataagtaagtttgcatcgaaa 6454582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 8849791 - 8849872
Alignment:
Q  417 ttatggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaa--aatgtattgcctttattaata 496  Q
    ||||||||||||| ||| |||  ||||||||| ||||||  ||||||| ||||||||||  | ||| |||||||||||||||    
T  8849791 ttatggaatatttacaaataaccaggggtaaagtaggaagaaaaatagactacaccaaattagtgttttgcctttattaata 8849872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 420 - 505
Target Start/End: Complemental strand, 14309360 - 14309272
Alignment:
Q  420 tggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaaa---atgtattgcctttattaataggtatagat 505  Q
    |||||| |||||||||| | | ||||| ||| || || || ||||||||||||||||   | |||||||||||||||||| ||||||||    
T  14309360 tggaatttttgcaattagtgaagggtataatgggtaaaaatataggctacaccaaaagaaaagtattgcctttattaataagtatagat 14309272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 17097580 - 17097531
Alignment:
Q  458 aaaataggctacaccaaaaa--tgtattgcctttattaataggtatagat 505  Q
    |||| |||||||||| ||||  ||||||||||||||||||||||||||||    
T  17097580 aaaaaaggctacaccgaaaacatgtattgcctttattaataggtatagat 17097531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 21686110 - 21686159
Alignment:
Q  458 aaaataggctacaccaaaaat--gtattgcctttattaataggtatagat 505  Q
    |||| |||||||||||||||   |||||||||||||||||||||||||||    
T  21686110 aaaaaaggctacaccaaaaaaaagtattgcctttattaataggtatagat 21686159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 23158166 - 23158117
Alignment:
Q  458 aaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||  || |||||| ||||||||||||||||||||    
T  23158166 aaaataggctacaccaaacaaaagtattgtctttattaataggtatagat 23158117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 7463745 - 7463794
Alignment:
Q  226 agtgagcaagcatgactttaaatttaatgggaagg-taagaatatcaatg 274  Q
    ||||| ||||| |||||||||| |||||||||||| ||||||||||||||    
T  7463745 agtgaccaagcgtgactttaaaattaatgggaaggttaagaatatcaatg 7463794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 442 - 504
Target Start/End: Complemental strand, 22294115 - 22294051
Alignment:
Q  442 gggtaaaataggaaataaaataggctacaccaaaa--atgtattgcctttattaataggtataga 504  Q
    ||||||| |||| || |||||||||||||| ||||  | ||||||||||||||||||| ||||||    
T  22294115 gggtaaagtaggtaaaaaaataggctacactaaaatcaagtattgcctttattaatagttataga 22294051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 3e-45; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 975 - 1143
Target Start/End: Original strand, 37626694 - 37626863
Alignment:
Q  975 tgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgt 1073  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||  ||| ||||| |||| |||||||||||    
T  37626694 tgctaaccattgcccttggggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtgatcattgataagaaaaaagtaaagacttgt 37626793  T
Q  1074 atttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||| || |||||||| ||||    
T  37626794 atttccaagacaaagtttatattaatgaaatccttaaccattgccctcaggacactagttagcaagaccc 37626863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 968 - 1134
Target Start/End: Complemental strand, 41260147 - 41259980
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    |||| |||| ||||||||| | || | ||||  ||||||||| |||||||||||||||||||| |||||||| ||||||  ||| ||| | |||||||||    
T  41260147 aggaaaatgttaaccattgtccttggtgcatcggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaatcattgataaaaaaaaaataaa 41260048  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggtta 1134  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||| | |||||||    
T  41260047 gacttgtattttcaagacaaagtttctattaatggaatccttaaccattgcccttagggcactggtta 41259980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 967 - 1115
Target Start/End: Original strand, 53654263 - 53654412
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    |||||||||||||||||||| | ||||| |||| ||||||||| ||||||||||| |||||||| ||||| || ||||||| |||| |||| |||| |||    
T  53654263 aaggagaatgctaaccattgtcattaggtcattggttaaagtattaaaataagtatgtttgcatcgaaaaatggtgtaattattgcgaagaaaaaagtaa 53654362  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaaccatt 1115  Q
    |||||||||||| |||||||| |||| |||| |||||||  |||||||||    
T  53654363 agacttgtatttacaagacaaagtttctatttatggaatttttaaccatt 53654412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 968 - 1138
Target Start/End: Original strand, 33395304 - 33395475
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    |||||||||||||| ||||||||| || |||| ||||||||| |||||| ||||||||| |||  ||||||| | ||||| ||||||||| | || ||||    
T  33395304 aggagaatgctaacaattgcctttgggacattggttaaagtattaaaatgagtaagtttacatcaaaaagtggtataattattgctaagaaataagtaaa 33395403  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    ||||||||||||||||| || ||||  |||| ||||||| |||||||||||| ||||| | ||| |||||||    
T  33395404 gacttgtatttccaagataaagtttccattattggaatcattaaccattgcccttagggccctgattagcaa 33395475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1005 - 1143
Target Start/End: Original strand, 41163046 - 41163185
Alignment:
Q  1005 aagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaa 1103  Q
    |||||||||||||||| ||||| ||| |||||||| ||||||| ||||||||| |||| |||| ||||||||||| |||||||  ||| ||||||| |||    
T  41163046 aagtactaaaataagttagtttacatcgaaaagtggtgtaattattgctaagaaaaaagtaaatacttgtatttctaagacaacatttttattaatagaa 41163145  T
Q  1104 tccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |  |||||||||| ||||||| | ||||||||||| ||||    
T  41163146 tgtttaaccattgtctttagggcactggttagcaacaccc 41163185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 970 - 1143
Target Start/End: Original strand, 11086241 - 11086418
Alignment:
Q  970 gagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaag--tgatgta---attttgctaagacaaaaata 1064  Q
    ||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||| ||  ||||   | | |||   || ||||||||| |||| ||    
T  11086241 gagaatgctaaccattgccctt-gggcattggttaaagtattaaaataagtaagtttgtataaaaaaaaattaggtataaatattgctaagaaaaaagta 11086339  T
Q  1065 aagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||| |||||||||||||| || |||  |||||||| ||||||||||||||||| ||||| | ||||||||||| ||||    
T  11086340 aagatttgtatttccaagataaagttcctattaatgaaatccttaaccattgcccttagggcactggttagcaagaccc 11086418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 996 - 1109
Target Start/End: Original strand, 14124199 - 14124313
Alignment:
Q  996 cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatttt-gctaagacaaaaataaagacttgtatttccaagacaatgtttata 1094  Q
    |||| ||||||||| |||||||||||| ||||||| ||||| || ||||||||| ||||||| |||| |||| |||| ||||||||| |||| |||| ||    
T  14124199 cattggttaaagtattaaaataagtaaatttgcatcgaaaaatggtgtaatttttgctaagaaaaaagtaaaaacttatatttccaaaacaaagtttcta 14124298  T
Q  1095 ttaatggaatcctta 1109  Q
    |||||||||||||||    
T  14124299 ttaatggaatcctta 14124313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 988 - 1112
Target Start/End: Original strand, 37858193 - 37858319
Alignment:
Q  988 ctttagggcattagttaaagtacta-aaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagaca 1085  Q
    |||| ||||||| |||||||||||| ||||||| |||||||||| |||||||||| ||||| ||||||||| |||| |||| |||||||||| ||||| |    
T  37858193 ctttggggcattggttaaagtactataaataaggaagtttgcatcgaaaagtgatttaattattgctaagaaaaaagtaaaaacttgtattttcaagata 37858292  T
Q  1086 atgtttatattaatggaatccttaacc 1112  Q
    | |||| |||||||  |||||||||||    
T  37858293 aagtttctattaatcaaatccttaacc 37858319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 388 - 469
Target Start/End: Original strand, 51033231 - 51033313
Alignment:
Q  388 gtaaccaacttcacttttaaccgtttatattat-ggaatatttgcaattaattaggggtaaaataggaaataaaataggctac 469  Q
    ||||||||||||||||  ||| ||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51033231 gtaaccaacttcacttcaaacagtttatatttttggaatatttgcaattaattaggggtaaaataggaaagaaaataggctac 51033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1001 - 1118
Target Start/End: Complemental strand, 52838057 - 52837939
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaat 1099  Q
    ||||||||| |||||||||||||||||||| ||||| || | ||||| ||| ||||| |||| ||||||| ||||||||||| | ||||||| |||||||    
T  52838057 gttaaagtattaaaataagtaagtttgcatcgaaaaatggtataattattgttaagaaaaaagtaaagacatgtatttccaaaataatgtttctattaat 52837958  T
Q  1100 ggaatccttaaccattgcc 1118  Q
    | |||| ||||||||||||    
T  52837957 gaaatctttaaccattgcc 52837939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 968 - 1138
Target Start/End: Complemental strand, 16502556 - 16502386
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    |||||||||||||  | |||| || ||||||| |||||||||||||||||||||| | |  |   ||||||  ||||| | |||| |||| |||| ||||    
T  16502556 aggagaatgctaatgagtgcccttggggcattggttaaagtactaaaataagtaactctaaaacaaaaagttgtgtaaatattgccaagagaaaa-taaa 16502458  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
     | ||||||||||||||||| |||| || ||||||| ||||||||||||||| ||||| | |||||||||||    
T  16502457 aatttgtatttccaagacaaagtttctactaatggattccttaaccattgcccttagggcactggttagcaa 16502386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 967 - 1138
Target Start/End: Complemental strand, 2392730 - 2392558
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    ||||||||||||||  | || | |||||| ||| ||||||||  ||||||  ||||||| ||||  ||||||| |||| || |||| ||||||||| |||    
T  2392730 aaggagaatgctaatgagtgtccttagggaattggttaaagtgttaaaatttgtaagttagcataaaaaagtggtgtagttattgccaagacaaaagtaa 2392631  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    | ||||| |||| |||||||| |||| || ||||||| |||||||||| |||  ||||| | |||||||||||    
T  2392630 aaacttgcatttacaagacaaagtttctactaatggattccttaaccaatgctcttagggcactggttagcaa 2392558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1002 - 1101
Target Start/End: Original strand, 48497420 - 48497520
Alignment:
Q  1002 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatg 1100  Q
    |||||||| |||||||| |||||||| || |||||||| | ||||  ||| ||||| |||||||||||||||||||| |||||||| |||| ||||||||    
T  48497420 ttaaagtattaaaataaataagtttgtatcgaaaagtggtataatcattgataagaaaaaaataaagacttgtattttcaagacaaagtttttattaatg 48497519  T
Q  1101 g 1101  Q
    |    
T  48497520 g 48497520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 964 - 1124
Target Start/End: Complemental strand, 388521 - 388359
Alignment:
Q  964 gttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaa 1062  Q
    |||||| | |||| ||| ||||| | || ||||||| |||||||||||||||||| ||| ||||||| |||||  | || |||| |||| |||| ||||     
T  388521 gttaagaataatgttaatcattgtccttggggcattggttaaagtactaaaataaataaatttgcatggaaaatgggtgcaattattgcgaagaaaaaat 388422  T
Q  1063 -taaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttagg 1124  Q
     ||||||||| ||||| |||||||| |||| | ||||||||||| |||| ||||||| |||||    
T  388421 gtaaagacttatattttcaagacaaagtttcttttaatggaatcattaatcattgcccttagg 388359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1001 - 1116
Target Start/End: Original strand, 21865192 - 21865307
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaat 1099  Q
    ||||||||  |||||||||||||||||||| ||||| || ||||||  ||||||||| |||| |||| | |||||||||||||| ||  ||  |||||||    
T  21865192 gttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtatttccaagataaaattactattaat 21865290  T
Q  1100 ggaatccttaaccattg 1116  Q
    ||||||||||| |||||    
T  21865291 ggaatccttaagcattg 21865307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1001 - 1116
Target Start/End: Original strand, 21921053 - 21921168
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaat 1099  Q
    ||||||||  |||||||||||||||||||| ||||| || ||||||  ||||||||| |||| |||| | |||||||||||||| ||  ||  |||||||    
T  21921053 gttaaagttttaaaataagtaagtttgcatcgaaaaatggtgtaatcattgctaaga-aaaagtaaaaatttgtatttccaagataaaattactattaat 21921151  T
Q  1100 ggaatccttaaccattg 1116  Q
    ||||||||||| |||||    
T  21921152 ggaatccttaagcattg 21921168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1002 - 1083
Target Start/End: Complemental strand, 32906226 - 32906144
Alignment:
Q  1002 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaaga 1083  Q
    |||||||  |||||| |||||||||||||| |||| || ||||||| ||||||||||||||||||| |||| ||||| |||||    
T  32906226 ttaaagtgttaaaattagtaagtttgcattaaaaaatgttgtaattattgctaagacaaaaataaaaacttatatttacaaga 32906144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1048 - 1113
Target Start/End: Complemental strand, 37645393 - 37645330
Alignment:
Q  1048 ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaacca 1113  Q
    |||||||||||||| ||||  ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  37645393 ttgctaagacaaaactaaa--cttgtattttcaagacaatatttatattaatggattccttaacca 37645330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 51036012 - 51036085
Alignment:
Q  438 ttaggggtaaaataggaaataaaa----taggctacaccaaaaat--gtattgcctttattaataggtatagat 505  Q
    ||||||||||||| ||||| ||||    |||||||||||||||||  |||||||||||||||||||||||||||    
T  51036012 ttaggggtaaaattggaaaaaaaaaaggtaggctacaccaaaaataggtattgcctttattaataggtatagat 51036085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 995 - 1118
Target Start/End: Complemental strand, 35827870 - 35827747
Alignment:
Q  995 gcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttat 1093  Q
    ||||| |||||| || |||||||||||||||||| | ||||| |||||||||| ||| ||||| ||||||||| |||| |||||  || |||  |||| |    
T  35827870 gcattggttaaaatattaaaataagtaagtttgcttcgaaaaatgatgtaattattgttaagaaaaaaataaa-acttttatttttaaaacatcgtttct 35827772  T
Q  1094 attaatggaatccttaaccattgcc 1118  Q
    ||||||  |||||||||||| ||||    
T  35827771 attaatataatccttaaccaatgcc 35827747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 993 - 1083
Target Start/End: Complemental strand, 54335273 - 54335182
Alignment:
Q  993 gggcattagttaaagtactaaaataagtaagtttgcat-tgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaaga 1083  Q
    ||||||| ||||||||||||||||||||||||||||||   ||||||| || |||| |||| |||| | || |||||||||||||||||||||    
T  54335273 gggcattggttaaagtactaaaataagtaagtttgcataaaaaaagtggtgcaattattgc-aagaaacaagtaaagacttgtatttccaaga 54335182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 13759595 - 13759645
Alignment:
Q  457 taaaataggctacaccaaaaa--tgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  13759595 taaaataggctacaccaaatagatgtattgcctttattaataggtatagat 13759645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 458 - 505
Target Start/End: Complemental strand, 581484 - 581435
Alignment:
Q  458 aaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||  || |||||||||||||||||||||||||||    
T  581484 aaaataggctacaccaaactaaagtattgcctttattaataggtatagat 581435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 973 - 1046
Target Start/End: Original strand, 48582157 - 48582231
Alignment:
Q  973 aatgctaaccattgcctttagggcattag-ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat 1046  Q
    ||||||||||||||  ||| | ||||| | ||||||||||||||||||||||||||||| ||||| || ||||||    
T  48582157 aatgctaaccattgtttttggagcatttgattaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaat 48582231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 581797 - 581742
Alignment:
Q  452 ggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    ||||| ||||||||||||||||||  || |||||| ||||||||||||||||||||    
T  581797 ggaaagaaaataggctacaccaaattaaagtattgtctttattaataggtatagat 581742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 964 - 1138
Target Start/End: Original strand, 35422384 - 35422559
Alignment:
Q  964 gttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaa 1062  Q
    |||||| |||||| |||| | || |||| ||||||  ||||||||  |||||| |||||||||||||| |||| |  ||||||| ||| ||||||||||     
T  35422384 gttaagaagaatgttaacgaatgtctttggggcatcggttaaagtgttaaaattagtaagtttgcattaaaaaatagtgtaattattgataagacaaaag 35422483  T
Q  1063 taaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    ||   |||| |||||||||  ||| |||| |||||| | | || |||||||||||  ||||| | || ||||||||    
T  35422484 tagttacttatatttccaatgcaaagtttttattaaagaattctttaaccattgctcttagggcactagttagcaa 35422559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 999 - 1041
Target Start/End: Complemental strand, 18094527 - 18094485
Alignment:
Q  999 tagttaaagtactaaaataagtaagtttgcattgaaaagtgat 1041  Q
    |||||||||||||| ||||||||||||| |||| |||||||||    
T  18094527 tagttaaagtactacaataagtaagtttacattaaaaagtgat 18094485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1077
Target Start/End: Original strand, 34341419 - 34341501
Alignment:
Q  996 cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtattt 1077  Q
    |||| |||||||| || ||||| ||||||||| ||| ||||||  ||||||| |||||||||||||| ||||  |||||||||    
T  34341419 cattggttaaagttctcaaatatgtaagtttgtattaaaaagttgtgtaattattgctaagacaaaagtaaaatcttgtattt 34341501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 35579447 - 35579496
Alignment:
Q  458 aaaataggctacaccaaaaat--gtattgcctttattaataggtatagat 505  Q
    |||| |||||||||||||||   |||||||||||||||||||||||||||    
T  35579447 aaaaaaggctacaccaaaaaatagtattgcctttattaataggtatagat 35579496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 1e-44; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 986 - 1122
Target Start/End: Complemental strand, 40019598 - 40019462
Alignment:
Q  986 gcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattttgctaagacaaaaataaagacttgtatttccaagaca 1085  Q
    |||||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||    
T  40019598 gcctttggggcattggttaaagtattaaaataaataagtttgcattgaaaagtgatgtattattgctaagaaaaaagtaaagacttgtatttccaagaca 40019499  T
Q  1086 atgtttatattaatggaatccttaaccattgccttta 1122  Q
    | |||| ||||||||||||||||||||||||| ||||    
T  40019498 aagtttttattaatggaatccttaaccattgcattta 40019462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 973 - 1138
Target Start/End: Complemental strand, 23070362 - 23070192
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaa----agtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaag 1067  Q
    |||||||||||||||| || ||||||| |||||    |||| |||||||||||| ||||||| |||||||| ||||||  ||||||||| |||| |||||    
T  23070362 aatgctaaccattgcccttggggcatttgttaattaaagtattaaaataagtaaatttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaag 23070263  T
Q  1068 acttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaa 1138  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||||||| | ||||| | |||||||||||    
T  23070262 acttgtatttccaagacaaagtttctattaatggaattcttaaccattgtccttagggcactggttagcaa 23070192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 966 - 1143
Target Start/End: Original strand, 22680693 - 22680872
Alignment:
Q  966 taaggagaatgctaaccattgcctttaggg-cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaat 1063  Q
    ||||||||||||||| ||||  | |||| | |||| ||||||||||| |||||||||||||||||| |||||||| ||||||  ||||||||| ||||||    
T  22680693 taaggagaatgctaatcattatccttagagacattggttaaagtacttaaataagtaagtttgcatcgaaaagtggtgtaatgattgctaagaaaaaaat 22680792  T
Q  1064 aaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||||||| ||||| ||||||||||||||||||||| | ||| |||||||| ||||| ||||| ||  ||||||| ||||    
T  22680793 aaagacttttattttcaagacaatgtttatattaataggatctttaaccatcgccttcaggacactaattagcaacaccc 22680872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 967 - 1145
Target Start/End: Complemental strand, 31860428 - 31860249
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    ||||| |||||||||||||||| ||  | |||| |||||||||||||||| ||||||||||||| ||||| || ||||||| ||| |||||  ||| |||    
T  31860428 aaggataatgctaaccattgccattgagccattggttaaagtactaaaatgagtaagtttgcatcgaaaaatggtgtaattattgataagaagaaagtaa 31860329  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaatacccaa 1145  Q
    ||||||||||||||||||||| ||||  |||| | ||||| |||||||||||| ||||| | ||||||||||| ||||||    
T  31860328 agacttgtatttccaagacaaagttttcattattagaatctttaaccattgcccttagggcactggttagcaagacccaa 31860249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 973 - 1143
Target Start/End: Original strand, 25240250 - 25240421
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagactt 1071  Q
    |||||||||||||||| || || ||||  ||||||||| ||||||||||||||||||| ||| |||| ||||||  ||| ||||| ||||||||||| ||    
T  25240250 aatgctaaccattgcccttgggacattgattaaagtacgaaaataagtaagtttgcatcgaacagtggtgtaatcattgataagaaaaaaataaagattt 25240349  T
Q  1072 gtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    || ||||||||||||  ||| ||||||| |||| ||||||||||| | ||||||| ||||||||||| ||||    
T  25240350 gtttttccaagacaaaatttctattaatagaattcttaaccattgtccttaggacactggttagcaaaaccc 25240421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 26643160 - 26643043
Alignment:
Q  388 gtaaccaacttcacttttaaccgtttatattat-ggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaa---aaatgtatt 483  Q
    ||||||||||||||||  ||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||| |||||    
T  26643160 gtaaccaacttcacttcaaacggtttatatttttggaatatttgcaattaattaggggtaaaataggaaagaaaataggctacaccaaaagaaaagtatt 26643061  T
Q  484 gcctttattaataggtat 501  Q
    ||||||||||||||||||    
T  26643060 gcctttattaataggtat 26643043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 388 - 505
Target Start/End: Complemental strand, 45623443 - 45623321
Alignment:
Q  388 gtaaccaacttcacttttaaccgtttatat---tatggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaa--aatgtat 482  Q
    ||||||||||||||||  ||| |||||| |   | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||    
T  45623443 gtaaccaacttcacttcaaacagtttatttgtctttggaatatttgcaattaattaggggtaaaataggaaagaaaataggctacaccaaaagaaagtat 45623344  T
Q  483 tgcctttattaataggtatagat 505  Q
    |||||||||||||||||||||||    
T  45623343 tgcctttattaataggtatagat 45623321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 969 - 1078
Target Start/End: Complemental strand, 31245372 - 31245262
Alignment:
Q  969 ggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaag 1067  Q
    |||||||||||||||||||   | ||||||| ||| |||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||| | |||    
T  31245372 ggagaatgctaaccattgctcatggggcattggttgaagtactaaaataagtaagtttgcatcgaaaaatggtgtaattattgctaagacaaaagtgaag 31245273  T
Q  1068 acttgtatttc 1078  Q
    |||||||||||    
T  31245272 acttgtatttc 31245262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1001 - 1110
Target Start/End: Complemental strand, 7833637 - 7833524
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagaca---atgtttatatt 1096  Q
    |||||||||||||||||| |||||||||||  |||| |||||||||| ||||||||| |||| ||||||||||||||||||||| |   |||||| ||||    
T  7833637 gttaaagtactaaaataaataagtttgcataaaaaaatgatgtaattattgctaagaaaaaagtaaagacttgtatttccaagataatgatgtttctatt 7833538  T
Q  1097 aatggaatccttaa 1110  Q
    ||| ||||||||||    
T  7833537 aatagaatccttaa 7833524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 1055 - 1115
Target Start/End: Original strand, 46302890 - 46302950
Alignment:
Q  1055 gacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccatt 1115  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  46302890 gacaaaaataaagacttgtatttccaagacaatatttctattaatggaatccttaaccatt 46302950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 1034 - 1116
Target Start/End: Complemental strand, 3338534 - 3338451
Alignment:
Q  1034 aaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattg 1116  Q
    |||||||||||||| |||||||||||||| |||| | |||||||| ||||||||||||| |||||||||||||||||| |||||    
T  3338534 aaagtgatgtaattattgctaagacaaaagtaaaaatttgtattttcaagacaatgtttttattaatggaatccttaatcattg 3338451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 967 - 1115
Target Start/End: Complemental strand, 2256567 - 2256419
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    ||||| |||||||||||||||  || |   ||| ||| ||||| |||||||||||||||||||| |||||||| ||||||  || |||||| ||||||||    
T  2256567 aaggataatgctaaccattgctcttggaatattggttgaagtattaaaataagtaagtttgcatcgaaaagtggtgtaatcattcctaaga-aaaaataa 2256469  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaaccatt 1115  Q
    | ||||| ||||| ||||||  |||| |||||||||||||||||| ||||    
T  2256468 atacttgcatttctaagacatagtttctattaatggaatccttaatcatt 2256419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 968 - 1047
Target Start/End: Original strand, 46302505 - 46302584
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt 1047  Q
    ||||||||| ||||||||||| ||| | |||| |||||| ||||||||| ||||||||||||||||||| ||||| ||||    
T  46302505 aggagaatgttaaccattgcccttatgacattggttaaaatactaaaattagtaagtttgcattgaaaactgatgcaatt 46302584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1063 - 1119
Target Start/End: Complemental strand, 11907333 - 11907277
Alignment:
Q  1063 taaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcct 1119  Q
    |||||||||||||||| || ||||  ||| |||||||||||||||||||||||||||    
T  11907333 taaagacttgtatttctaaaacaaattttctattaatggaatccttaaccattgcct 11907277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 1725864 - 1725914
Alignment:
Q  457 taaaataggctacaccaaaaa--tgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  1725864 taaaataggctacaccaaatagatgtattgcctttattaataggtatagat 1725914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 1970443 - 1970533
Alignment:
Q  417 ttatggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    ||||||||||||| ||| |||  || |||||| ||||||  ||||||||||||||||||  | | | |||||||||||||||| |||||||    
T  1970443 ttatggaatatttacaaataaccagaggtaaattaggaagaaaaataggctacaccaaattagtattttgcctttattaatagttatagat 1970533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 450 - 505
Target Start/End: Complemental strand, 39700567 - 39700510
Alignment:
Q  450 taggaaataaaataggctacaccaa--aaatgtattgcctttattaataggtatagat 505  Q
    ||||||| |||||||||||||||||  ||| || || |||||||||||||||||||||    
T  39700567 taggaaagaaaataggctacaccaaacaaaagttttacctttattaataggtatagat 39700510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 7e-40; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 969 - 1144
Target Start/End: Original strand, 7736271 - 7736447
Alignment:
Q  969 ggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaag 1067  Q
    |||||||||||||||||||| || || |||| ||||||||||| |||||||||||||| ||||||||||||  |||||  ||||||||| |||| |||||    
T  7736271 ggagaatgctaaccattgcccttgggacattggttaaagtacttaaataagtaagtttccattgaaaagtggcgtaatgattgctaagaaaaaattaaag 7736370  T
Q  1068 acttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    |||||||||| ||||| || |||| ||||||||| ||| |||||||||||| ||||| | ||||||||||| |||||    
T  7736371 acttgtattttcaagataaagtttctattaatgggatctttaaccattgcccttagggcactggttagcaagaccca 7736447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 968 - 1144
Target Start/End: Complemental strand, 30252097 - 30251920
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    |||||||| ||||||||||| |||  || ||| |||||||||||||||||| ||  |||| || |||||||| ||||||| ||||||||| |||| ||||    
T  30252097 aggagaattctaaccattgcatttgaggtattggttaaagtactaaaataaatatatttgtatcgaaaagtggtgtaattattgctaagaaaaaagtaaa 30251998  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||| ||||| | ||||||| ||| |||||    
T  30251997 gacttgtatttccaagacaaaatttctattaatggaatccttaaccattgcccttagggcactggttaccaagaccca 30251920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 967 - 1118
Target Start/End: Original strand, 25731186 - 25731339
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaag-acaaaaata 1064  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| |||||||| | |||||||    
T  25731186 aaggagaatgctaaccattgccttttgggcattggttaaagtactaaaataagtaagtttgcatagaaaagttgtgtaattattgctaagaaaaaaaata 25731285  T
Q  1065 aagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcc 1118  Q
    |||| ||| ||||  ||||||| |||| |||| ||||||||||| | |||||||    
T  25731286 aagatttgaatttttaagacaaagtttttattgatggaatccttcatcattgcc 25731339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 973 - 1143
Target Start/End: Original strand, 42641090 - 42641260
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagactt 1071  Q
    |||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||  ||| ||||| |||| |||||||||    
T  42641090 aatgctaatcattgctttt-gggcattggttaaagtactaaaataagtaagtttgcatcgaaaaatggtgtaatcattgataagaaaaaagtaaagactt 42641188  T
Q  1072 gtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||||| |||||||| |||| ||||||| ||||||||||| |||| ||||  ||| ||||||||||| ||||    
T  42641189 gtattttcaagacaaagtttctattaatagaatccttaactattgtctttgtgacactggttagcaaaaccc 42641260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 968 - 1143
Target Start/End: Complemental strand, 1638119 - 1637944
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaa 1066  Q
    ||||||||  ||||||||| |||| |||||||  |||||| |||||||||| |||||||||||  ||||||  ||||||| ||||||||| |||| ||||    
T  1638119 aggagaatattaaccattgtcttt-gggcattgattaaagaactaaaataaataagtttgcatcaaaaagttgtgtaattattgctaagaaaaaagtaaa 1638021  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
     | |||||||||||||||||  ||||||||||| ||||| |||||||||||| ||| ||  ||||||||||| ||||    
T  1638020 aatttgtatttccaagacaaaatttatattaatagaatcattaaccattgcccttaagatactggttagcaagaccc 1637944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 971 - 1066
Target Start/End: Complemental strand, 1042140 - 1042044
Alignment:
Q  971 agaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaa 1066  Q
    |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || ||||||  ||||||||| |||| ||||    
T  1042140 agaatgttaaccattgcctttggggcattagttaaagtactaaaaaaagtaagtttgcatcgaaaattggtgtaataattgctaagaaaaaagtaaa 1042044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 967 - 1111
Target Start/End: Original strand, 10511066 - 10511210
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    |||||||||| ||||||| ||| |   |||||| ||||||||| |||||| ||||| ||||||||||||| || ||||||| ||||||||| |||||  |    
T  10511066 aaggagaatgataaccatcgccctcgaggcattggttaaagtagtaaaatgagtaactttgcattgaaaaatggtgtaattattgctaaga-aaaaagta 10511164  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaac 1111  Q
    ||||||||||||||||  ||| ||||  |||| |||||||||||||    
T  10511165 agacttgtatttccaaagcaaagtttccattattggaatccttaac 10511210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 420 - 497
Target Start/End: Complemental strand, 4001521 - 4001442
Alignment:
Q  420 tggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaaa--atgtattgcctttattaatag 497  Q
    ||||||| ||||||| | | ||||||||||||||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  4001521 tggaataattgcaataattgaggggtaaaataggaaataaaataggctacacctaaatcatgttttgcctttattaatag 4001442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 978 - 1084
Target Start/End: Complemental strand, 1042038 - 1041932
Alignment:
Q  978 taaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagacttgtatt 1076  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||| || ||||| || ||||||  ||||||||| |||| |||| |||| ||||    
T  1042038 taaccattgcccttggggcattagttaaagtactaaaaaaagtaagtttgtatcgaaaattggtgtaataattgctaagaaaaaagtaaa-acttatatt 1041940  T
Q  1077 tccaagac 1084  Q
    | ||||||    
T  1041939 ttcaagac 1041932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1001 - 1139
Target Start/End: Complemental strand, 14157105 - 14156966
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaat 1099  Q
    ||||||||  ||||||||||||||||||||  | ||||||||||||| ||| |||||||||| |||| | |||||||| ||||| ||  ||| ||||||     
T  14157105 gttaaagttgtaaaataagtaagtttgcatcaataagtgatgtaattattgataagacaaaagtaaaaatttgtatttacaagataaaatttctattaaa 14157006  T
Q  1100 ggaatccttaaccattgcctttaggactctggttagcaat 1139  Q
    ||| || |||| || || ||||||||| || |||||||||    
T  14157005 ggattcattaatcaatgtctttaggacacttgttagcaat 14156966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 1002 - 1143
Target Start/End: Complemental strand, 31112529 - 31112387
Alignment:
Q  1002 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatg 1100  Q
    ||||| || ||||||||||||||||| |||||||  || ||||||| ||  | | | |||  ||||| |||||||||  |||||||| ||| ||||||||    
T  31112529 ttaaactattaaaataagtaagtttgtattgaaatatggtgtaattattatttaaaaaaatgtaaagccttgtatttttaagacaatatttctattaatg 31112430  T
Q  1101 gaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    ||||| |||||||||||| ||||| | ||||||||||| ||||    
T  31112429 gaatcattaaccattgcccttagggcactggttagcaagaccc 31112387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 442 - 505
Target Start/End: Complemental strand, 42880152 - 42880087
Alignment:
Q  442 gggtaaaataggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtatagat 505  Q
    |||||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  42880152 gggtaaaataggtaggaaaataggctacaccaaagcaatgtattgcctttattaataggtatagat 42880087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 996 - 1124
Target Start/End: Original strand, 33085274 - 33085403
Alignment:
Q  996 cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttata 1094  Q
    |||| ||||||||  |||||| || ||||||||||  ||||||| |||| || |||||||||||||| |||| | || ||||| |||||||| |||| ||    
T  33085274 cattggttaaagtgttaaaattagcaagtttgcatacaaaagtggtgtagttattgctaagacaaaagtaaaaatttatattttcaagacaaagtttcta 33085373  T
Q  1095 ttaatggaatccttaaccattgcctttagg 1124  Q
     ||||||| |||||||||| |||| |||||    
T  33085374 ctaatggattccttaaccaatgcccttagg 33085403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 41612887 - 41612837
Alignment:
Q  458 aaaataggctacaccaaa--aatgtattgcctttattaataggtatagatg 506  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  41612887 aaaataggctacaccaaaccaaagtattgcctttattaataggtatagatg 41612837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 965 - 1047
Target Start/End: Complemental strand, 1447701 - 1447619
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt 1047  Q
    ||||||||||||||||| |||||| |||||||||| |||||   || |||||||||||||||  | ||||||||  |||||||    
T  1447701 ttaaggagaatgctaactattgcccttagggcattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaatt 1447619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 965 - 1027
Target Start/End: Complemental strand, 20078413 - 20078351
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttg 1027  Q
    |||||||||||| |||||||| || || | ||||| |||||||||||||||||||||| ||||    
T  20078413 ttaaggagaatgttaaccattacccttggagcattggttaaagtactaaaataagtaaatttg 20078351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 35332611 - 35332660
Alignment:
Q  458 aaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    |||||||||||||| ||||  |||||||||||||||||||||||||||||    
T  35332611 aaaataggctacactaaaagcatgtattgcctttattaataggtatagat 35332660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 728 - 806
Target Start/End: Original strand, 40995302 - 40995380
Alignment:
Q  728 tgccacatcatatgttttgtgcagttaaatttcacaaaagtctaaaatcaaataatctttaaattataagactggaatc 806  Q
    ||||||||||| | |||||| |||||||||  ||| ||||||||||| |||| ||||||||||||| |||  |||||||    
T  40995302 tgccacatcatttattttgtacagttaaataacacgaaagtctaaaagcaaagaatctttaaattaaaaggttggaatc 40995380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 996 - 1099
Target Start/End: Original strand, 10418595 - 10418699
Alignment:
Q  996 cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttata 1094  Q
    ||||| |||||||| |||||||||||| |||| | | ||| ||  ||||||| ||| ||| ||||||||||| ||||||||||  ||||||| |||||||    
T  10418595 cattaattaaagtattaaaataagtaactttgaaataaaatgttgtgtaattattgttaaaacaaaaataaaaacttgtattttgaagacaaagtttata 10418694  T
Q  1095 ttaat 1099  Q
     ||||    
T  10418695 ctaat 10418699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 993 - 1116
Target Start/End: Complemental strand, 26402126 - 26402002
Alignment:
Q  993 gggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagacttgtatttccaagacaatgttt 1091  Q
    ||||||| |||| ||||||||||||||||| ||| || | ||||||  ||||||  ||| |||||||||| | ||  |||| |||||||| ||||  |||    
T  26402126 gggcattggttagagtactaaaataagtaatttttcaataaaaagttgtgtaatcattgttaagacaaaagtgaaagcttgcatttccaatacaaaattt 26402027  T
Q  1092 atattaatggaatccttaaccattg 1116  Q
     || ||||||| |||||||||||||    
T  26402026 ctactaatggattccttaaccattg 26402002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 973 - 1083
Target Start/End: Complemental strand, 34596650 - 34596541
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaattttgctaagacaaaaat-aaagactt 1071  Q
    |||||||||||||| |||| || |||| |||||| |  |||||||| ||||||||||| |||| ||| | |||  ||||||||| |||||| ||| ||||    
T  34596650 aatgctaaccattgtctttgggacattggttaaaatggtaaaataaataagtttgcatcgaaatgtggtataa--ttgctaagaaaaaaataaaatactt 34596553  T
Q  1072 gtatttccaaga 1083  Q
    ||||| ||||||    
T  34596552 gtattcccaaga 34596541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1011 - 1113
Target Start/End: Original strand, 4858078 - 4858180
Alignment:
Q  1011 taaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatcctta 1109  Q
    |||||| |||||||||| ||| |||| |||||||||| |||||||||||||| |||| | || |||||  ||||||| ||| |||| |||||| || |||    
T  4858078 taaaattagtaagtttgtattaaaaa-tgatgtaattattgctaagacaaaagtaaaaatttatatttataagacaaagttaatatcaatggattcatta 4858176  T
Q  1110 acca 1113  Q
    ||||    
T  4858177 acca 4858180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 798
Target Start/End: Complemental strand, 19214107 - 19214076
Alignment:
Q  767 gtctaaaatcaaataatctttaaattataaga 798  Q
    ||||||||||||||||||||||||||||||||    
T  19214107 gtctaaaatcaaataatctttaaattataaga 19214076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 23196123 - 23196175
Alignment:
Q  457 taaaataggctacaccaaa----aatgtattgcctttattaataggtatagat 505  Q
    |||||||||||||||||||    || |||||||||||||||||||||||||||    
T  23196123 taaaataggctacaccaaaccaaaaagtattgcctttattaataggtatagat 23196175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1052 - 1143
Target Start/End: Original strand, 35626642 - 35626733
Alignment:
Q  1052 taagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||||||||| |||| |||| ||||| ||| ||||  ||| |||||||||| ||||||||||||| | ||||| | || |||||||| ||||    
T  35626642 taagacaaaagtaaaaacttatattttcaaaacaaaatttctattaatggattccttaaccattgtccttagggcactagttagcaagaccc 35626733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 418 - 476
Target Start/End: Original strand, 21126534 - 21126592
Alignment:
Q  418 tatggaatatttgcaattaattaggggtaaaataggaaataaaataggctacaccaaaa 476  Q
    |||||||||||| ||| |||| ||||||||||| || ||  ||||||||||||||||||    
T  21126534 tatggaatatttacaaataatcaggggtaaaatgggtaaacaaataggctacaccaaaa 21126592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 463 - 505
Target Start/End: Complemental strand, 19832258 - 19832214
Alignment:
Q  463 aggctacaccaaaaat--gtattgcctttattaataggtatagat 505  Q
    |||||||||||||||   |||||||||||||||||||||||||||    
T  19832258 aggctacaccaaaaaaaagtattgcctttattaataggtatagat 19832214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 21126308 - 21126357
Alignment:
Q  226 agtgagcaagcatgactttaaatttaatgggaagg-taagaatatcaatg 274  Q
    ||||| ||||| |||||||||| |||||||||||| ||||||||||||||    
T  21126308 agtgaccaagcgtgactttaaaattaatgggaaggttaagaatatcaatg 21126357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 81; Significance: 2e-37; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 969 - 1112
Target Start/End: Complemental strand, 246656 - 246512
Alignment:
Q  969 ggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaag 1067  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||| |||| ||||     
T  246656 ggagaatgctaaccattgcccttagggcattagttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaattattgctcagaaaaaagtaaaa 246557  T
Q  1068 acttgtatttccaagacaatgtttatattaatggaatccttaacc 1112  Q
    |||||||||| ||||||||  ||| ||||| | ||||| ||||||    
T  246556 acttgtattttcaagacaaattttttattagtagaatctttaacc 246512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 7e-37; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 7e-37
Query Start/End: Original strand, 967 - 1113
Target Start/End: Complemental strand, 31915190 - 31915043
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataa 1065  Q
    |||||||||| ||||||||| | || ||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||| || ||| || |||| |||    
T  31915190 aaggagaatggtaaccattgtccttggggcattggttaaagtattaaaataagtaagtttgcatcgaaaagtggtgtaattatttctatgaaaaaagtaa 31915091  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaacca 1113  Q
    |||||||||||| |||||||| |||| |||||||||||||||||||||    
T  31915090 agacttgtattttcaagacaaagtttctattaatggaatccttaacca 31915043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 1e-35
Query Start/End: Original strand, 968 - 1120
Target Start/End: Original strand, 31921207 - 31921359
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaa 1066  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||| | |||||||| ||||||  ||||||||| |||||||||    
T  31921207 aggagaatgttaaccattgcccttagggcattggttaaagtacttaaataagtaagtttgcctcgaaaagtggtgtaatgattgctaaga-aaaaataaa 31921305  T
Q  1067 gacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctt 1120  Q
     |||||||||| |||||||| |||| ||||||||| ||| ||||||||| ||||    
T  31921306 tacttgtattttcaagacaaagtttctattaatgggatcattaaccattacctt 31921359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 972 - 1123
Target Start/End: Complemental strand, 8033410 - 8033260
Alignment:
Q  972 gaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagact 1070  Q
    ||||||||||||||||| || ||||||| ||||||||| |||||||||||| ||||||| |||||||| ||||||| ||| ||| | |||| |||| |||    
T  8033410 gaatgctaaccattgcccttggggcattggttaaagtattaaaataagtaaatttgcatcgaaaagtggtgtaattattgataa-aaaaaagtaaa-act 8033313  T
Q  1071 tgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttag 1123  Q
    ||||||| ||||| || |||| |||||||| ||||||||| ||||| ||||||    
T  8033312 tgtattttcaagataaagtttctattaatgaaatccttaatcattgtctttag 8033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 969 - 1111
Target Start/End: Complemental strand, 38373478 - 38373335
Alignment:
Q  969 ggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaag 1067  Q
    |||||||| | ||||||||  || | ||||| |||||| || |||||||||||| ||||||| ||||| || ||||||| ||||||||| |||| ||||     
T  38373478 ggagaatgattaccattgctcttggagcattggttaaaatattaaaataagtaaatttgcatcgaaaaatggtgtaattattgctaagataaaagtaaaa 38373379  T
Q  1068 acttgtatttccaagacaatgtttatattaatggaatccttaac 1111  Q
    |||||||||||||||| || |||| ||||||||||||| |||||    
T  38373378 acttgtatttccaagataaagtttctattaatggaatcattaac 38373335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 996 - 1116
Target Start/End: Complemental strand, 31598154 - 31598032
Alignment:
Q  996 cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaa--taaagacttgtatttccaagacaatgttta 1092  Q
    |||| |||||| ||||||||||||||||||||||| |||| ||| | ||||| ||||||||| |||||  |||||| ||| ||||||||||||| ||||     
T  31598154 cattggttaaaatactaaaataagtaagtttgcatcgaaa-gtggtataattattgctaagaaaaaaaagtaaagatttgaatttccaagacaaagtttc 31598056  T
Q  1093 tattaatggaatccttaaccattg 1116  Q
    ||||||||||||||||||| ||||    
T  31598055 tattaatggaatccttaactattg 31598032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 973 - 1071
Target Start/End: Original strand, 35005195 - 35005294
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagactt 1071  Q
    ||||||| ||||| || || ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||  ||||||||| |||| |||||||||    
T  35005195 aatgctatccattacccttggggcattggttaaagtactaaaataagtaagtttgcatcgaaaagtggtgtaatcattgctaagaaaaaagtaaagactt 35005294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1001 - 1110
Target Start/End: Complemental strand, 2396798 - 2396688
Alignment:
Q  1001 gttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaat 1099  Q
    |||||||||||||||||||||| |||| ||| ||||||| ||||||  |||  |||| |||| |||||| || ||| |||||||||| |||| |||||||    
T  2396798 gttaaagtactaaaataagtaattttgtattaaaaagtggtgtaatcattgtcaagaaaaaagtaaagatttatatctccaagacaaagtttttattaat 2396699  T
Q  1100 ggaatccttaa 1110  Q
    |||||||||||    
T  2396698 ggaatccttaa 2396688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 995 - 1143
Target Start/End: Complemental strand, 16209934 - 16209785
Alignment:
Q  995 gcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttat 1093  Q
    ||||| |||||||||||||||||||||| |||  |   ||||||  ||||| | |||||||||||||| |||| |||||||||||||| |||| |||| |    
T  16209934 gcattggttaaagtactaaaataagtaactttaaaacaaaaagttgtgtaactattgctaagacaaaagtaaacacttgtatttccaaaacaaagtttct 16209835  T
Q  1094 attaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    | || |||| | ||||||||||||| ||| ||| ||| ||||||| ||||    
T  16209834 actattggatttcttaaccattgcccttaagacactgattagcaaaaccc 16209785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1063 - 1143
Target Start/End: Complemental strand, 37519717 - 37519638
Alignment:
Q  1063 taaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||| | || |||||||| ||||    
T  37519717 taaagacttgtatttc-aagacaaagtttatattaatggaatccttaaccattgtccttagggcactagttagcaagaccc 37519638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1048 - 1143
Target Start/End: Original strand, 8793859 - 8793954
Alignment:
Q  1048 ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||| |||||||||||||| |||| |||||||||||||| |||| ||||| | || |||||||||| |||| ||||| | ||||||||||| ||||    
T  8793859 ttgccaagacaaaaataaaaacttatatttccaagacaaagtttctattagtagattccttaaccaatgcccttagggcactggttagcaagaccc 8793954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 970 - 1111
Target Start/End: Original strand, 12800755 - 12800896
Alignment:
Q  970 gagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaaga 1068  Q
    ||||||| |||||||| |||||  |||||| ||||||||| ||| |||||||| |||| || ||||| || | ||||| ||| ||||| |||| |||| |    
T  12800755 gagaatgttaaccattacctttgaggcattggttaaagtattaagataagtaaatttgtatcgaaaattggtctaattattgttaagaaaaaagtaaa-a 12800853  T
Q  1069 cttgtatttccaagacaatgtttatattaatggaatccttaac 1111  Q
     || ||||| |||||||| |||| ||||||||||||| |||||    
T  12800854 tttatattttcaagacaaagtttctattaatggaatcattaac 12800896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 965 - 1026
Target Start/End: Complemental strand, 14846021 - 14845960
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagttt 1026  Q
    |||||||||||||||||||||||| ||  | |||| ||||||||| ||||||||||||||||    
T  14846021 ttaaggagaatgctaaccattgcccttgagtcattggttaaagtattaaaataagtaagttt 14845960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1063 - 1115
Target Start/End: Complemental strand, 14845911 - 14845860
Alignment:
Q  1063 taaagacttgtatttccaagacaatgtttatattaatggaatccttaaccatt 1115  Q
    |||||||||||||||| |||||||  ||||||||||||||||| |||||||||    
T  14845911 taaagacttgtatttc-aagacaaaatttatattaatggaatctttaaccatt 14845860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 965 - 1030
Target Start/End: Complemental strand, 37519829 - 37519762
Alignment:
Q  965 ttaaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagt--aagtttgcat 1030  Q
    |||||||||||||||||||||||| ||  | |||| ||||||||| ||||||||||  ||||||||||    
T  37519829 ttaaggagaatgctaaccattgcccttgagtcattggttaaagtattaaaataagtaaaagtttgcat 37519762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1052 - 1143
Target Start/End: Original strand, 168718 - 168808
Alignment:
Q  1052 taagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    ||||| |||| |||||| ||||||||| |||| ||  ||| |||||||||||||||||| ||||||| ||||| | || |||||||| ||||    
T  168718 taagaaaaaagtaaagatttgtatttctaagataaaatttctattaatggaatccttaa-cattgcccttagggcacttgttagcaagaccc 168808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 968 - 1007
Target Start/End: Original strand, 17074464 - 17074503
Alignment:
Q  968 aggagaatgctaaccattgcctttagggcattagttaaag 1007  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  17074464 aggagaatgctaaccattgcccttagggcattagataaag 17074503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 446 - 504
Target Start/End: Complemental strand, 24069930 - 24069869
Alignment:
Q  446 aaaataggaaataaaataggctacaccaaaa---atgtattgcctttattaataggtataga 504  Q
    ||||| |||| ||||| ||||||||||||||   | ||||||||||||||||||||||||||    
T  24069930 aaaattggaactaaaaaaggctacaccaaaagaaaagtattgcctttattaataggtataga 24069869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 25423731 - 25423812
Alignment:
Q  427 tttgcaattaattaggggtaaaataggaaataaaataggctacaccaaaa---atgtattgcctttattaataggtatagat 505  Q
    |||||||||| | | ||||| ||| || || ||||||| |||||||||||   | |||||||||||||||||||||||||||    
T  25423731 tttgcaattagtgaagggtataatgggtaaaaaaatagactacaccaaaagaaaagtattgcctttattaataggtatagat 25423812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 23463744 - 23463793
Alignment:
Q  458 aaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    |||| ||||||||||||||  | |||||||||||||||||||||||||||    
T  23463744 aaaaaaggctacaccaaaacaaagtattgcctttattaataggtatagat 23463793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 999 - 1041
Target Start/End: Complemental strand, 37852132 - 37852090
Alignment:
Q  999 tagttaaagtactaaaataagtaagtttgcattgaaaagtgat 1041  Q
    |||||||||||||| ||||||||||||| |||| |||||||||    
T  37852132 tagttaaagtactacaataagtaagtttacattaaaaagtgat 37852090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 44923875 - 44923924
Alignment:
Q  458 aaaataggctacaccaaaaat--gtattgcctttattaataggtatagat 505  Q
    |||| |||||||||||||||   |||||||||||||||||||||||||||    
T  44923875 aaaaaaggctacaccaaaaaatagtattgcctttattaataggtatagat 44923924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 29464284 - 29464233
Alignment:
Q  457 taaaataggctacaccaaa---aatgtattgcctttattaataggtatagat 505  Q
    ||||||| |||||||||||   || |||||||||||||||||||||||||||    
T  29464284 taaaataagctacaccaaacgtaaagtattgcctttattaataggtatagat 29464233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 2e-33; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 971 - 1091
Target Start/End: Complemental strand, 8772541 - 8772420
Alignment:
Q  971 agaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagac 1069  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||| |||| ||||||||| |||||||    
T  8772541 agaatgctaaccattgcccttggggcattggttaaagtactaaaataagtaaatttgcatcgaaaagtggtgtaattattgccaagacaaaagtaaagac 8772442  T
Q  1070 ttgtatttccaagacaatgttt 1091  Q
    |||||||| |||||||| ||||    
T  8772441 ttgtattttcaagacaaagttt 8772420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 980 - 1117
Target Start/End: Original strand, 12188616 - 12188754
Alignment:
Q  980 accattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttc 1078  Q
    ||||||||| || ||||||| | |||||||||||||||||||| |||| |||||||| || ||||||| ||||||||| |||| |||| | |||||||||    
T  12188616 accattgcccttggggcattggataaagtactaaaataagtaattttgtattgaaaaatggtgtaattattgctaagaaaaaagtaaaaatttgtatttc 12188715  T
Q  1079 caagacaatgtttatattaatggaatccttaaccattgc 1117  Q
    |||||||| |||| ||||||||||||||||||| |||||    
T  12188716 caagacaaagtttctattaatggaatccttaacgattgc 12188754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1002 - 1143
Target Start/End: Original strand, 44603632 - 44603774
Alignment:
Q  1002 ttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatg 1100  Q
    |||||||||| |||||||||||||||| |  ||||||| ||||||  ||||||||| ||||||||||| ||||| || |||||||| |||||||||||||    
T  44603632 ttaaagtacttaaataagtaagtttgcctcaaaaagtggtgtaatgattgctaagaaaaaaataaagatttgtactttcaagacaaagtttatattaatg 44603731  T
Q  1101 gaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    | |||||||||||||||| ||||| | ||||||||||| ||||    
T  44603732 ggatccttaaccattgcccttagggcactggttagcaagaccc 44603774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 967 - 1143
Target Start/End: Complemental strand, 26701673 - 26701496
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataa 1065  Q
    |||||||||| ||||||||| | ||  | |||| ||||||||||| |||||||||||||||||| |||||||||||||||  ||| ||||| |||| |||    
T  26701673 aaggagaatgttaaccattgtcattgtgacattggttaaagtacttaaataagtaagtttgcatcgaaaagtgatgtaatgattgataagaaaaaagtaa 26701574  T
Q  1066 agacttgtatttccaagacaatgtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    ||| |||||||| ||||| || |||| ||||||||  ||  |||||||||||| |||||||  |||||||||| ||||    
T  26701573 agatttgtattttcaagagaaagtttctattaatgagatttttaaccattgcccttaggacaatggttagcaagaccc 26701496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 973 - 1143
Target Start/End: Complemental strand, 4449149 - 4448977
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagactt 1071  Q
    ||||||| | |||| | |||| ||||| |||||||||||||||||| || ||||| |||||||| || ||||||| ||| ||||| |||||| || ||||    
T  4449149 aatgctaccgattgtccttagcgcattggttaaagtactaaaataaataggtttgtattgaaaaatggtgtaattattgttaagaaaaaaattaaaactt 4449050  T
Q  1072 gtatttccaagacaat-gtttatattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    ||||||| |||||||  |||| | |||||||||||||||||||||||| |||||||  |||||||||| ||||    
T  4449049 gtatttctaagacaaaagtttctgttaatggaatccttaaccattgcccttaggacattggttagcaagaccc 4448977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 973 - 1116
Target Start/End: Complemental strand, 2193407 - 2193263
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaaaataaagactt 1071  Q
    |||| ||||||||||| ||  |||||| ||||||||| |||||||||||| ||| ||| |||||||| ||||||  ||| ||||| |||| |||||| ||    
T  2193407 aatgttaaccattgcccttgtggcattggttaaagtattaaaataagtaaatttacatcgaaaagtggtgtaatcattgataagaaaaaagtaaagattt 2193308  T
Q  1072 gtatttccaagacaatgtttatattaatggaatccttaaccattg 1116  Q
     ||||| ||||| || |||| ||||||| ||||||||||| ||||    
T  2193307 atattttcaagataaagtttctattaatagaatccttaactattg 2193263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 967 - 1118
Target Start/End: Original strand, 42723900 - 42724054
Alignment:
Q  967 aaggagaatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaa-ta 1064  Q
    |||||||||| ||| ||||||| || | ||||| |||||| ||||||||||| ||||||||||   ||||  ||||||||| ||| ||||| ||||| ||    
T  42723900 aaggagaatgttaatcattgcccttggagcattggttaaattactaaaataaataagtttgcaccaaaaaa-gatgtaattattgttaagaaaaaaagta 42723998  T
Q  1065 aaga--cttgtatttccaagacaatgtttatattaatggaatccttaaccattgcc 1118  Q
    ||||  | |||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  42723999 aagagacgtgtatttcaaagacaaagtttctattaatggaatccttaaccattgcc 42724054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 996 - 1083
Target Start/End: Original strand, 7330541 - 7330629
Alignment:
Q  996 cattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaaga 1083  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||| |||| ||||||||| ||||  ||| |||||||||| |||||    
T  7330541 cattggttaaagtactaaaataagtaagcatgcattgaaaagtgatgcaattattgctaagaaaaaagcaaatacttgtattttcaaga 7330629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 973 - 1086
Target Start/End: Complemental strand, 4489409 - 4489294
Alignment:
Q  973 aatgctaaccattgcctttagggcattagttaaagtactaaaataagtaagtttgcattgaaaagtgatgtaat-tttgctaagacaaa-aataaagact 1070  Q
    ||||||||||||||||||| |  |||| ||||||||| |||||||||||||||||||  ||||||| |||||||  ||| ||||| ||| | ||||||||    
T  4489409 aatgctaaccattgcctttggaacattggttaaagtattaaaataagtaagtttgcaaagaaaagttatgtaatcattgataagaaaaatagtaaagact 4489310  T
Q  1071 tgtatttccaagacaa 1086  Q
    | ||||||||| ||||    
T  4489309 tatatttccaatacaa 4489294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1093 - 1143
Target Start/End: Complemental strand, 4489062 - 4489012
Alignment:
Q  1093 tattaatggaatccttaaccattgcctttaggactctggttagcaataccc 1143  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||| ||||    
T  4489062 tattaatgaaatccttaaccattgcctttagggccctggttagcaagaccc 4489012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 458 - 504
Target Start/End: Complemental strand, 15718821 - 15718773
Alignment:
Q  458 aaaataggctacaccaaa--aatgtattgcctttattaataggtataga 504  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||    
T  15718821 aaaatatgctacaccaaagtaatgtattgcctttattaataggtataga 15718773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 458 - 501
Target Start/End: Original strand, 2251025 - 2251069
Alignment:
Q  458 aaaataggctacaccaaaa-atgtattgcctttattaataggtat 501  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  2251025 aaaataggctacaccaaaaaatgtattacctttattaataggtat 2251069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 15847411 - 15847460
Alignment:
Q  458 aaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||   |||| ||||||||||||||||||||||||    
T  15847411 aaaataggctacaccaaatccatgttttgcctttattaataggtatagat 15847460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 442 - 497
Target Start/End: Complemental strand, 42955828 - 42955771
Alignment:
Q  442 gggtaaaataggaaataaaataggctacaccaaaaa--tgtattgcctttattaatag 497  Q
    ||||||||| ||||  |||||| |||||||||||||  ||||||||||||||||||||    
T  42955828 gggtaaaatgggaaggaaaataagctacaccaaaaagatgtattgcctttattaatag 42955771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1023 - 1091
Target Start/End: Complemental strand, 38889382 - 38889313
Alignment:
Q  1023 gtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgttt 1091  Q
    |||| |||||||||||| | ||||| ||||| |||||||| ||||| |||| ||||||||||||| ||||    
T  38889382 gtttacattgaaaagtggtataattattgctgagacaaaagtaaagccttggatttccaagacaaagttt 38889313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 45; Significance: 5e-16; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1005 - 1144
Target Start/End: Complemental strand, 83644 - 83504
Alignment:
Q  1005 aagtactaaaataagtaagtttgcattgaaaagtgatgtaatt-ttgctaagacaaaaataaagacttgtatttccaagacaatgtttatattaatggaa 1103  Q
    ||||| |||||| |||||||||||||| ||||||  ||||||| ||| |||||||||| |||| | || |||||| ||||||| ||||||||||| |||     
T  83644 aagtattaaaattagtaagtttgcattaaaaagtagtgtaattattgataagacaaaagtaaaaatttatatttcgaagacaaagtttatattaaaggat 83545  T
Q  1104 tccttaaccattgcctttaggactctggttagcaataccca 1144  Q
    ||||||  ||||||| ||||  | | ||||||||| |||||    
T  83544 tccttatgcattgcccttagagcaccggttagcaagaccca 83504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 11572 - 11622
Alignment:
Q  457 taaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  11572 taaaataggctacaccaaaaccaagtattgcctttattaataggtatagat 11622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 457 - 505
Target Start/End: Original strand, 25872 - 25922
Alignment:
Q  457 taaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||||    
T  25872 taaaataggctacaccaaaaccaagtattgcctttattaataggtatagat 25922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 35; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 33847 - 33916
Alignment:
Q  438 ttaggggtaaaataggaaataaaataggctacaccaaaa--atgtattgcctttattaataggtatagat 505  Q
    ||||||||||| | || || |||| ||||||||||||||  | |||||||||||||||||||||||||||    
T  33847 ttaggggtaaacttggcaaaaaaaaaggctacaccaaaagcaagtattgcctttattaataggtatagat 33916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 446 - 505
Target Start/End: Complemental strand, 6214 - 6152
Alignment:
Q  446 aaaataggaaataaaataggctacaccaaaa---atgtattgcctttattaataggtatagat 505  Q
    ||||| |||| ||||| ||||||||||||||   | |||||||||||||||||||||||||||    
T  6214 aaaattggaactaaaaaaggctacaccaaaagaaaagtattgcctttattaataggtatagat 6152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 418 - 505
Target Start/End: Complemental strand, 5220 - 5129
Alignment:
Q  418 tatggaatatttgcaattaattaggggtaaaatagg--aaataaaataggctacaccaaaaatgtatt--gcctttattaataggtatagat 505  Q
    |||||||||||| ||| |||| |||| |||||| ||  ||| ||||||||||| ||||||| | ||||  ||||||||||||||||||||||    
T  5220 tatggaatatttacaaataatcagggataaaatgggtaaaaaaaaataggctataccaaaattatattttgcctttattaataggtatagat 5129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 1645 - 1694
Alignment:
Q  458 aaaataggctacaccaaaaatgtatt--gcctttattaataggtatagat 505  Q
    ||||||||||||||||||| ||| ||  ||||||||||||||||||||||    
T  1645 aaaataggctacaccaaaagtgtgttttgcctttattaataggtatagat 1694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 7156 - 7205
Alignment:
Q  458 aaaataggctacaccaaaaatgtatt--gcctttattaataggtatagat 505  Q
    ||||||||||||||||||| ||| ||  ||||||||||||||||||||||    
T  7156 aaaataggctacaccaaaagtgtgttttgcctttattaataggtatagat 7205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 450 - 501
Target Start/End: Original strand, 152910 - 152963
Alignment:
Q  450 taggaaataaaataggctacaccaaa--aatgtattgcctttattaataggtat 501  Q
    ||||||| |||||||||||||| |||  ||||| ||||||||||||||||||||    
T  152910 taggaaagaaaataggctacacgaaacaaatgttttgcctttattaataggtat 152963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0537 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 11366 - 11315
Alignment:
Q  457 taaaataggctacaccaaaaat---gtattgcctttattaataggtatagat 505  Q
    ||||||||||||||| |||| |   |||||||||||||||||||||||||||    
T  11366 taaaataggctacacgaaaagtaaagtattgcctttattaataggtatagat 11315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 885 - 936
Alignment:
Q  458 aaaataggctacaccaaaa---atgtattgcctttattaataggtatagatg 506  Q
    |||| ||||||||||||||   | ||||||||||||||||||||||||||||    
T  885 aaaaaaggctacaccaaaagaaaagtattgcctttattaataggtatagatg 936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 4777 - 4726
Alignment:
Q  457 taaaataggctacaccaaaa---atgtattgcctttattaataggtatagat 505  Q
    ||||||||||||||||||||   | |||||||||||| ||||||||||||||    
T  4777 taaaataggctacaccaaaagaaaagtattgcctttactaataggtatagat 4726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University