View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9059_low_20 (Length: 410)

Name: NF9059_low_20
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9059_low_20
NF9059_low_20
[»] chr8 (4 HSPs)
chr8 (132-391)||(10393686-10393949)
chr8 (19-76)||(10393956-10394013)
chr8 (42-87)||(15001265-15001310)
chr8 (19-87)||(33743579-33743646)
[»] chr6 (3 HSPs)
chr6 (42-87)||(2617195-2617240)
chr6 (42-87)||(28951425-28951470)
chr6 (26-86)||(33824892-33824951)
[»] chr2 (7 HSPs)
chr2 (42-87)||(21497693-21497738)
chr2 (42-86)||(41542974-41543018)
chr2 (42-87)||(13000711-13000756)
chr2 (42-87)||(14735883-14735928)
chr2 (42-87)||(32957533-32957578)
chr2 (22-87)||(42108118-42108183)
chr2 (22-62)||(3113742-3113781)
[»] chr5 (1 HSPs)
chr5 (42-86)||(12909157-12909201)
[»] chr4 (4 HSPs)
chr4 (22-86)||(26033282-26033345)
chr4 (22-87)||(1701615-1701680)
chr4 (42-87)||(47704608-47704653)
chr4 (22-62)||(16612646-16612686)
[»] chr3 (2 HSPs)
chr3 (26-87)||(334837-334898)
chr3 (42-87)||(3755365-3755410)
[»] chr1 (2 HSPs)
chr1 (42-87)||(30678803-30678848)
chr1 (22-62)||(45652134-45652174)
[»] chr7 (1 HSPs)
chr7 (23-87)||(18773746-18773809)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 132 - 391
Target Start/End: Complemental strand, 10393949 - 10393686
Alignment:
Q  132 aaggtttaactactctatagttcattcatctagtcttaaacaagtcaataaattgtaattatatttctaaattnnnnnnnnnnnnnnn----catcatga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||    
T  10393949 aaggtttaactactctatagttcattcatctagtcttaaacaagtcaataaattgtaattatatttctaaattaaaaaaaaaaaaaaaaaatcatcatga 10393850  T
Q  228 gatctttaaacttgacttcctccctgacttctctctaaaaccctaaacaccacgatgtctctcttcctccaattccaagctcttttcttcacgatgcaga 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10393849 gatctttaaacttgacttcctccctgacttctctctaaaaccctaaacaccacgatgtctctcttcctccaattccaagctcttttcttcacgatgcaga 10393750  T
Q  328 cttggcgcatggtggtttgaagaggtccttccttcgcaccatcttttcacccctttgggattac 391  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  10393749 cttggtgcatggtggtttgaagaggtccttccttcacatcatcttttcacccctttgggattac 10393686  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 10394013 - 10393956
Alignment:
Q  19 acatagttcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacc 76  Q
    ||||| |||||||| |||||||||||  ||||||||||||| |||||||||| |||||    
T  10394013 acataattcagttggtaaggacaaatatataaaatatgtaatgttcaaggttcaaacc 10393956  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 15001310 - 15001265
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||||||||| ||||| ||||||| ||||| ||||||||||    
T  15001310 aatgcataaaatatgcaaggtccaaggttcaaaccccggccaccac 15001265  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 33743579 - 33743646
Alignment:
Q  19 acatagttcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    |||||| ||||||| | ||||||| ||||||||||||| ||||| | ||||| |||| |||||||||||    
T  33743579 acatagctcagttggtgaggacaa-tgcataaaatatgcaaggtccgaggttcaaacttcggccaccac 33743646  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 2617240 - 2617195
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||    
T  2617240 aatgcataatatatgtaaggtttgaggtttaaacctcggccaccac 2617195  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 28951425 - 28951470
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| ||||| ||||||||  ||||||||||||||||||||    
T  28951425 aatgcataatatatgcaaggttcagagtttaaacctcggccaccac 28951470  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 33824892 - 33824951
Alignment:
Q  26 tcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccacca 86  Q
    ||||||||||||||||| ||||||| ||||| ||||| |  |||| |||||||||||||||    
T  33824892 tcagttgataaggacaa-tgcataatatatgcaaggtccggggttcaaacctcggccacca 33824951  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 21497693 - 21497738
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  21497693 aatgcataatatatgcaaggttcgaggtttaaacctcggccaccac 21497738  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 41543018 - 41542974
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccacca 86  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||    
T  41543018 aatgcataatatatgtaaggttcggggtttaaacctcggccacca 41542974  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 13000711 - 13000756
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| ||||||||||| | |||||||||||||||| |||||    
T  13000711 aatgcataatatatgtaaggtccgaggtttaaacctcggctaccac 13000756  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 14735928 - 14735883
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||||||||||||||||| ||||| ||||  ||||||||||    
T  14735928 aatgcataaaatatgtaaggttcgaggttcaaactccggccaccac 14735883  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 32957578 - 32957533
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| ||||||||||||   |||||||||||||||||||||    
T  32957578 aatgcataatatatgtaaggtttggggtttaaacctcggccaccac 32957533  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 42108183 - 42108118
Alignment:
Q  22 tagttcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    |||||||||| ||  ||| ||||| |||||||||| ||| |||  |||||||||||||||||||||    
T  42108183 tagttcagttaatttggagaaatgtataaaatatgcaagattcggggtttaaacctcggccaccac 42108118  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 3113781 - 3113742
Alignment:
Q  22 tagttcagttgataaggacaaatgcataaaatatgtaaggt 62  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  3113781 tagttcagttgataaggac-aatgcataaaatatgcaaggt 3113742  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 12909201 - 12909157
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccacca 86  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||    
T  12909201 aatgcataatatatgtaaggttcagggtttaaaccttggccacca 12909157  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 26033282 - 26033345
Alignment:
Q  22 tagttcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccacca 86  Q
    |||||||||||||| |||||| ||||||| ||||| ||| |||| |||||||||||| |||||||    
T  26033282 tagttcagttgatatggacaa-tgcataatatatgcaagcttcagggtttaaacctcagccacca 26033345  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 1701615 - 1701680
Alignment:
Q  22 tagttcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    |||||||||||||||||| |||||||||| ||||| ||||| | |||||  |||||| | ||||||    
T  1701615 tagttcagttgataaggataaatgcataatatatgcaaggtccgaggttcgaacctcagacaccac 1701680  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 47704608 - 47704653
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    |||| |||| ||||||||||||| |||||||||||||||| |||||    
T  47704608 aatgtataatatatgtaaggttcgaggtttaaacctcggcaaccac 47704653  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 16612646 - 16612686
Alignment:
Q  22 tagttcagttgataaggacaaatgcataaaatatgtaaggt 62  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  16612646 tagttcagttgataaggacaaatgcagaatatatgcaaggt 16612686  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 334898 - 334837
Alignment:
Q  26 tcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||| || |||||||||||||||||||| ||||| |  |||| ||||| ||||||||||    
T  334898 tcagttggtatggacaaatgcataaaatatgcaaggtccggggttcaaaccccggccaccac 334837  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 3755365 - 3755410
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| ||||| ||||| || |||||||||||||||||||||    
T  3755365 aatgcataatatatgcaaggtccagggtttaaacctcggccaccac 3755410  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 30678848 - 30678803
Alignment:
Q  42 aatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||| |||||||||||||| |||| |||| |||||||||||    
T  30678848 aatgcataatatatgtaaggttcatggttcaaacttcggccaccac 30678803  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 45652174 - 45652134
Alignment:
Q  22 tagttcagttgataaggacaaatgcataaaatatgtaaggt 62  Q
    ||||||| || |||||||||||||||||| |||||||||||    
T  45652174 tagttcaattaataaggacaaatgcataatatatgtaaggt 45652134  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 18773809 - 18773746
Alignment:
Q  23 agttcagttgataaggacaaatgcataaaatatgtaaggttcaaggtttaaacctcggccaccac 87  Q
    ||||||||||||| |||||| ||||||||||||||||||| |  |||| ||||| || |||||||    
T  18773809 agttcagttgatatggacaa-tgcataaaatatgtaaggtccggggttcaaaccccgaccaccac 18773746  T

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