View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_22 (Length: 408)
Name: NF9059_low_22
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 31629883 - 31630275
Alignment:
| Q |
1 |
aagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaaggacagcaggttagnnnnnnnnnnnnncgaccaaaaattctttagcaagttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||| |
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| T |
31629883 |
aagtatgcaaaaatcatctgttgttgataatgaaacaggaaagagtaaggacagcaggttagtttttttatttttcaaccaaaaattatttagcaagttc |
31629982 |
T |
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| Q |
101 |
cctctaagttcagtgttgaatattataaatcttgttttccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatattgcattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629983 |
cctctaagttcagtgttgaatattataaatcttgtttgccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatattgcattt |
31630082 |
T |
|
| Q |
201 |
agcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtag |
300 |
Q |
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| T |
31630083 |
agcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtag |
31630182 |
T |
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| Q |
301 |
gtgtgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgt |
393 |
Q |
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| T |
31630183 |
gtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgt |
31630275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 197 - 393
Target Start/End: Original strand, 31656424 - 31656620
Alignment:
| Q |
197 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
296 |
Q |
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| T |
31656424 |
atttagcatacgaacaagctctggaacatttcttgacagagaaggtgatgaaattgtgagcaatattgagaaaagaatcgctgattttacttttatacct |
31656523 |
T |
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| Q |
297 |
gtaggtgtgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctaatgctttttgactcaaccatgt |
393 |
Q |
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| T |
31656524 |
gtaggtgcgtaacacgttctttctgccttttgttttttcctttgttcaagaaactaaggcttgatgctcctgctagtgctttttgattcaaccatgt |
31656620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 124 - 306
Target Start/End: Original strand, 31637270 - 31637458
Alignment:
| Q |
124 |
tataaatcttgttttccttgtttagattgccattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctc |
217 |
Q |
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||||||||| |||| || |||||| ||| |||||| ||||||||| ||| ||||||||| ||||||||| |||||||| | |||||||||||| |
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| T |
31637270 |
tataaatctcgtttaccatgtttaaatttccattgccacttcattcatgtcaaaccttttgcttacatatttcttttgcatttagtgcacgaacaagctc |
31637369 |
T |
|
| Q |
218 |
tggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtgtgt |
306 |
Q |
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| T |
31637370 |
tggaacttttatcgacagaggatatgataaaattttgagcgatatcgagaaaagaattgctgattttacttttatacctgtaggtgtgt |
31637458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 154 - 303
Target Start/End: Original strand, 31646137 - 31646292
Alignment:
| Q |
154 |
cattgtcacttcattgatggttaaccttttgtttacatatt------gcatttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatga |
247 |
Q |
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| T |
31646137 |
cattgccacttcattgatgccaaaccttttgtttacatatttcttttgcatttagtgcacgtacaagctctggaacttttatcaacagaggacatgataa |
31646236 |
T |
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| Q |
248 |
aattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggtg |
303 |
Q |
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| T |
31646237 |
aattctgaggaatattgagcaaagaattgctgattttacttttatacctgtaggtg |
31646292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 31651645 - 31651754
Alignment:
| Q |
197 |
atttagcgtacgaacaagctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacct |
296 |
Q |
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|||||| | ||| |||||||||||| |||||||| | |||||| ||||| |||||||| ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
31651645 |
atttagggaacggacaagctctggagcttttcttaagagaggaagtgatagaattgtgaagaatattgagagaagaattgctgattttacttttatacct |
31651744 |
T |
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| Q |
297 |
gtaggtgtgt |
306 |
Q |
| |
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|||||||||| |
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| T |
31651745 |
gtaggtgtgt |
31651754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 302
Target Start/End: Complemental strand, 9105543 - 9105454
Alignment:
| Q |
213 |
agctctggaacttttcttgacagaggaggtgatgaaattgtgaggaatattgagaaaagaatcgctgattttacttttatacctgtaggt |
302 |
Q |
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||||||||||| ||||| | ||| ||| ||||| | |||||||||||||||||||||| ||| || || ||||||||||| ||||||||| |
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| T |
9105543 |
agctctggaacatttctggccaggggacgtgataagattgtgaggaatattgagaaaaaaattgccgactttacttttattcctgtaggt |
9105454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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