View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_24 (Length: 387)
Name: NF9059_low_24
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 41 - 357
Target Start/End: Original strand, 42974843 - 42975150
Alignment:
| Q |
41 |
aatgcattcattccactgtgttggttcaatttcatcatgctgatctctgaatatatctgtgagtggaatgaaattgaaatggacctctgtcatttgttta |
140 |
Q |
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| T |
42974843 |
aatgcattcattccactttgtt----caatttcatcatgctgatctctgaatatatctgtgagtggaatgaaattgaaatggacctctgtcatttgttta |
42974938 |
T |
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| Q |
141 |
ttattcaacccttggttttagctgagcttaagtcaaaattcaagaaattaggttaatgattaatactcatattgatgtgttagtttagttttataccaaa |
240 |
Q |
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| T |
42974939 |
ttattcaacccttggttttagctgagcttaagtcaaaattcaagaaattaggttaatgattaatactcatattgatgtg-----ttagttttataccaaa |
42975033 |
T |
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| Q |
241 |
aacatatggaattgacttgtcttattgttattcatctggctgatacatttttgtcatggacagtgttcatttgttgagcatcgcaactacaaaattgtat |
340 |
Q |
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| T |
42975034 |
aacatatggaattgacttttcttattgttattcatctggctgatacatttttgtcatggacagtgttcatttgttgagcatcgcaactacaaaattgtat |
42975133 |
T |
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| Q |
341 |
ataggcgctatgcatct |
357 |
Q |
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| T |
42975134 |
ataggcgctatgcatct |
42975150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 40191739 - 40191819
Alignment:
| Q |
277 |
tggctgatacatttttgtcatggacagtgttcatttgttgagcatcgcaactacaaaattgtatataggcgctatgcatct |
357 |
Q |
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| T |
40191739 |
tggctgatacatttttgtcatggacagtgttcatttgttgagcatcgcaactacaaaattgtatacaggcgctatgcatct |
40191819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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