View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9059_low_25 (Length: 377)

Name: NF9059_low_25
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9059_low_25
NF9059_low_25
[»] chr2 (8 HSPs)
chr2 (18-364)||(4424695-4425043)
chr2 (217-311)||(37202981-37203083)
chr2 (142-182)||(4425949-4425989)
chr2 (77-116)||(1481059-1481098)
chr2 (77-154)||(34456938-34457018)
chr2 (296-330)||(37203097-37203131)
chr2 (140-205)||(42683535-42683600)
chr2 (72-116)||(25297249-25297293)
[»] chr3 (7 HSPs)
chr3 (218-330)||(33840861-33840981)
chr3 (218-330)||(30287950-30288070)
chr3 (77-151)||(31070604-31070681)
chr3 (134-182)||(42989866-42989914)
chr3 (134-182)||(44006458-44006506)
chr3 (77-115)||(8262725-8262763)
chr3 (77-115)||(12515339-12515377)
[»] chr8 (7 HSPs)
chr8 (217-327)||(33174668-33174786)
chr8 (72-205)||(32473090-32473226)
chr8 (77-116)||(5772791-5772830)
chr8 (77-150)||(233932-234008)
chr8 (77-150)||(710343-710419)
chr8 (77-150)||(747555-747631)
chr8 (77-150)||(871450-871526)
[»] chr4 (4 HSPs)
chr4 (218-330)||(53897449-53897569)
chr4 (77-182)||(43036440-43036548)
chr4 (218-330)||(42077903-42078023)
chr4 (77-149)||(47110025-47110099)
[»] chr1 (5 HSPs)
chr1 (217-330)||(11701173-11701294)
chr1 (220-330)||(36858659-36858777)
chr1 (77-182)||(21761280-21761388)
chr1 (77-207)||(18981486-18981619)
chr1 (77-205)||(37770197-37770328)
[»] scaffold0146 (2 HSPs)
scaffold0146 (77-205)||(29930-30060)
scaffold0146 (77-205)||(32272-32402)
[»] chr7 (5 HSPs)
chr7 (72-158)||(18792623-18792712)
chr7 (220-269)||(18665452-18665501)
chr7 (134-182)||(27866875-27866923)
chr7 (69-182)||(18791924-18792040)
chr7 (135-182)||(27543685-27543732)
[»] chr5 (3 HSPs)
chr5 (77-154)||(43294199-43294279)
chr5 (77-182)||(36759165-36759273)
chr5 (137-205)||(5123755-5123824)
[»] chr6 (1 HSPs)
chr6 (77-116)||(2435290-2435329)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 4425043 - 4424695
Alignment:
Q  18 attctatctcagaaaagcaattttctacatttaaatatgaaaacgttatgttttttgataattgcttttttgacataaaaaacttcctaaagacacaaaa 117  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4425043 attctatgtcagaaaatcaattttctacttttaaatatgaaaacgttatgttttttgataattgct-ttttgacataaaaaacttcctaaagacacaaaa 4424945  T
Q  118 atacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaactaccgctgttcccaacgatagttaactaccgttcatatgtatg 217  Q
    ||||||||||||||    | ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||     
T  4424944 atacataaatgttt---ccagtagttaactaccgttgaggacccggcatcagttaactaccgctggtcccaacgatagttaactaccgttc-tatgtatc 4424849  T
Q  218 tgcaattcactttcctcattcttgtgagtttgattcttcacacttggtgttgctcttttttaggaacaagatgag-ttcaatcacataaaacaaatacaa 316  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  4424848 tgcaattcactttcttcattcttgtgggtttgattcttcacacttgttgttgctcttttttaggaacaagatgggtttcaatcacataaaacgaatacaa 4424749  T
Q  317 ataaattgaa------tcaacaaaacctcctgaacccatttttattttctttct 364  Q
    ||||||||||      ||||||||||||| ||||||||||||||||||||||||    
T  4424748 ataaattgaatcaatgtcaacaaaacctcttgaacccatttttattttctttct 4424695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 37202981 - 37203083
Alignment:
Q  217 gtgcaattcactttcctcattcttgtgagtttgattcttcacac------ttggtgttgctcttttttaggaacaaga--tgagttcaatcacataaaac 308  Q
    ||||||||||||||| ||||||||||| |||||||||||| |||      ||| ||||||||||||||||||||||||   || ||||||||||| ||||    
T  37202981 gtgcaattcactttcttcattcttgtgggtttgattcttcgcacttgttgttgttgttgctcttttttaggaacaagaatggatttcaatcacatgaaac 37203080  T
Q  309 aaa 311  Q
    |||    
T  37203081 aaa 37203083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 4425949 - 4425989
Alignment:
Q  142 ttaactaccgttgaggacccgacatcagttaactaccgctg 182  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  4425949 ttaactaccgttgaggacccgacaacagttaactaccgctg 4425989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 1481059 - 1481098
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaaa 116  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  1481059 aattgcttttttgacataaaaaacttcgtaaagacacaaa 1481098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 34456938 - 34457018
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacaca---aaaatacataaatgtttttagcggtagttaactaccgttg 154  Q
    ||||||||||||||||||||||||||  ||||||||||   ||||||| ||||||   | ||||||||||||||| |||||    
T  34456938 aattgcttttttgacataaaaaactttataaagacacaagtaaaatacttaaatgccctcagcggtagttaactatcgttg 34457018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 37203097 - 37203131
Alignment:
Q  296 aatcacataaaacaaatacaaataaattgaatcaa 330  Q
    |||||||||||||||||||||||||||||||||||    
T  37203097 aatcacataaaacaaatacaaataaattgaatcaa 37203131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 42683535 - 42683600
Alignment:
Q  140 agttaactaccgttgaggacccgacatcagttaactaccgctgttcccaacgatagttaactaccg 205  Q
    |||||||| | ||||||||||||||| ||||||||||||| || |  || || |||||||||||||    
T  42683535 agttaactcctgttgaggacccgacagcagttaactaccgttggtttcagcggtagttaactaccg 42683600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 25297249 - 25297293
Alignment:
Q  72 ttgataattgcttttttgacataaaaaacttcctaaagacacaaa 116  Q
    |||| |||||||||||| |||| |||||||||||||| |||||||    
T  25297249 ttgacaattgcttttttaacatcaaaaacttcctaaaaacacaaa 25297293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 33840981 - 33840861
Alignment:
Q  218 tgcaattcactttcctcattcttgtgagtttgattcttcacactt------ggtgttgctcttttttaggaacaaga-tgagtt-caatcacataaaaca 309  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||      | |||||||||||||||||||||||| |||||| |||||||||||||||    
T  33840981 tgcaattcactttcttcattcttgtgggtttgattcttcacactttctgttgttgttgctcttttttaggaacaagaatgagtttcaatcacataaaaca 33840882  T
Q  310 aatacaaataaattgaatcaa 330  Q
    |||||||||||||||||||||    
T  33840881 aatacaaataaattgaatcaa 33840861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 30288070 - 30287950
Alignment:
Q  218 tgcaattcactttcctcattcttgtgagtttgattcttcacacttggtgttg------ctcttttttaggaacaaga-tgagtt-caatcacataaaaca 309  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||| |||||      ||||||||||||||||||| || ||| |||||||||||||||    
T  30288070 tgcaattcactttcttcattcctgtgggtttgattcttcacacttgctgttgttgttgctcttttttaggaacaagaatgggtttcaatcacataaaaca 30287971  T
Q  310 aatacaaataaattgaatcaa 330  Q
    |||||||||||||||||||||    
T  30287970 aatacaaataaattgaatcaa 30287950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 31070604 - 31070681
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacaca---aaaatacataaatgtttttagcggtagttaactaccg 151  Q
    |||||||||||| |||||||||||||| |||  |||||   ||||||| ||||||||||  |||||||||||||||||    
T  31070604 aattgcttttttaacataaaaaacttcttaacaacacatgaaaaatacttaaatgttttccgcggtagttaactaccg 31070681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 42989866 - 42989914
Alignment:
Q  134 agcggtagttaactaccgttgaggacccgacatcagttaactaccgctg 182  Q
    |||||||||||||||||||||||||| ||||  ||||||||||| ||||    
T  42989866 agcggtagttaactaccgttgaggactcgacggcagttaactacagctg 42989914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 44006458 - 44006506
Alignment:
Q  134 agcggtagttaactaccgttgaggacccgacatcagttaactaccgctg 182  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||||||    
T  44006458 agcggtagttaactaccgttcaggaaccggcagcagttaactaccgctg 44006506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 8262725 - 8262763
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa 115  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  8262725 aattgcatttttgacataaaaaacttcataaagacacaa 8262763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 12515377 - 12515339
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa 115  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  12515377 aattgcttttttgacatagaaaacttcataaagacacaa 12515339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 327
Target Start/End: Original strand, 33174668 - 33174786
Alignment:
Q  217 gtgcaattcactttcctcattcttgtgagtttgattcttcacacttggtgttg------ctcttttttaggaacaaga-tgagtt-caatcacataaaac 308  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||      ||||||||||||||||||| |||||| ||||||||||||||    
T  33174668 gtgcaattcactttcttcattcttgtgggtttgattcttcacacttgctgttgttgttgctcttttttaggaacaagaatgagtttcaatcacataaaac 33174767  T
Q  309 aaatacaaataaattgaat 327  Q
    |||||||||||||||||||    
T  33174768 aaatacaaataaattgaat 33174786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 205
Target Start/End: Complemental strand, 32473226 - 32473090
Alignment:
Q  72 ttgataattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatca 168  Q
    |||| ||||| |||||||||||||||||||||  |  |||||||   |||||| ||||||   | ||  |||||||||||||| ||||||||||||| ||    
T  32473226 ttgaaaattgtttttttgacataaaaaacttcacatcgacacaagtaaaatacttaaatgccctaagtagtagttaactaccgctgaggacccgacaaca 32473127  T
Q  169 gttaactaccgctgttcccaacgatagttaactaccg 205  Q
    ||||||||||||||  ||||  | |||||||||||||    
T  32473126 gttaactaccgctggccccagtggtagttaactaccg 32473090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 5772791 - 5772830
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaaa 116  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  5772791 aattgcttttttgacataaaaaacctcataaagacacaaa 5772830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 233932 - 234008
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactacc 150  Q
    |||||||||| ||| ||||||||||||  || |||||||   |||||| |||||| | |||||||||||||||||||    
T  233932 aattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctcttagcggtagttaactacc 234008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 710343 - 710419
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactacc 150  Q
    |||||||||| ||| ||||||||||||  || |||||||   |||||| |||||| | |||||||||||||||||||    
T  710343 aattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctcttagcggtagttaactacc 710419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 747555 - 747631
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactacc 150  Q
    |||||||||| ||| ||||||||||||  || |||||||   |||||| |||||| | |||||||||||||||||||    
T  747555 aattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctcttagcggtagttaactacc 747631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 871450 - 871526
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactacc 150  Q
    |||||||||| ||| ||||||||||||  || |||||||   |||||| |||||| | |||||||||||||||||||    
T  871450 aattgcttttgtgatataaaaaacttcagaatgacacaagtaaaatacttaaatgctcttagcggtagttaactacc 871526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 218 - 330
Target Start/End: Complemental strand, 53897569 - 53897449
Alignment:
Q  218 tgcaattcactttcctcattcttgtgagtttgattcttcacacttggtgttg------ctcttttttaggaacaaga-tgag-ttcaatcacataaaaca 309  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||| |||||      ||||||||||||||||||| |||| ||| |||||||||||||    
T  53897569 tgcaattcactttcttcattcttgtgggtttgattcttcacacttgctgttgttgttgctcttttttaggaacaagaatgagattcgatcacataaaaca 53897470  T
Q  310 aatacaaataaattgaatcaa 330  Q
    |||||||||||||||||||||    
T  53897469 aatacaaataaattgaatcaa 53897449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 43036548 - 43036440
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    |||||||||||||||||||||||||||  || |||||||   |||||| ||||||    |||||||||||||||||||||||||||||| || |||||||    
T  43036548 aattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagcagttaa 43036449  T
Q  174 ctaccgctg 182  Q
    |||||||||    
T  43036448 ctaccgctg 43036440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 42077903 - 42078023
Alignment:
Q  218 tgcaattcactttcctcattcttgtgagtttgattcttcacacttggtgttg------ctcttttttaggaacaaga-tgagtt-caatcacataaaaca 309  Q
    |||||||||||||  ||||||||||| |||||||| |||||||||| |||||      ||||||||||||||||||| || ||| ||||||||||||| |    
T  42077903 tgcaattcactttgttcattcttgtgggtttgattgttcacacttgctgttgttgttgctcttttttaggaacaagaatgggtttcaatcacataaaata 42078002  T
Q  310 aatacaaataaattgaatcaa 330  Q
    |||||||||||||||||||||    
T  42078003 aatacaaataaattgaatcaa 42078023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 47110025 - 47110099
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactac 149  Q
    |||||||||||| ||||||||| ||| ||||||| ||||   |||||| ||||||| | |||||||||||||||||    
T  47110025 aattgcttttttaacataaaaa-cttactaaagatacaagtaaaatacttaaatgtctctagcggtagttaactac 47110099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 11701173 - 11701294
Alignment:
Q  217 gtgcaattcactttcctcattcttgtgagtttgattcttcacacttggtg------ttgctcttttttaggaacaaga-tgagtt-caatcacataaaac 308  Q
    |||||||| |||||| ||||||||||| ||||||||||||||||||| ||      |||||||| ||||||||||||| || ||| ||||||||||||||    
T  11701173 gtgcaatttactttcttcattcttgtgggtttgattcttcacacttgttgctgttgttgctcttgtttaggaacaagaatgggtttcaatcacataaaac 11701272  T
Q  309 aaatacaaataaattgaatcaa 330  Q
    ||||||||||||||||||||||    
T  11701273 aaatacaaataaattgaatcaa 11701294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 330
Target Start/End: Original strand, 36858659 - 36858777
Alignment:
Q  220 caattcactttcctcattcttgtgagtttgattcttcacacttggtgttg------ctcttttttaggaacaaga-tgagtt-caatcacataaaacaaa 311  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||| |||||      ||||||||||||||||||| || ||| ||| ||||| |||||||    
T  36858659 caattcactttcttcatttttgtgggtttgattcttcacacttgttgttgttgttgctcttttttaggaacaagaatgggtttcaaccacatcaaacaaa 36858758  T
Q  312 tacaaataaattgaatcaa 330  Q
    |||||||||||||||||||    
T  36858759 tacaaataaattgaatcaa 36858777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 21761280 - 21761388
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    |||||||||||||||||||||||||||  |  |||| ||   |||||  ||||||    |||||||||||||||||||||||||||||||||||||||||    
T  21761280 aattgcttttttgacataaaaaacttcacattgacaaaagtaaaatatctaaatgcccctagcggtagttaactaccgttgaggacccgacatcagttaa 21761379  T
Q  174 ctaccgctg 182  Q
    |||||||||    
T  21761380 ctaccgctg 21761388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 18981486 - 18981619
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacaca---aaaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||| |||||||    |||| ||||||||||||||| | ||   | |  |||||||    
T  18981486 aattgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactaccgttcaagaattgccgacagttaa 18981585  T
Q  174 ctaccgctgttcccaacgatagttaactaccgtt 207  Q
    |||||||||  | ||||| |||||||||||||||    
T  18981586 ctaccgctgaactcaacggtagttaactaccgtt 18981619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 37770197 - 37770328
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacaca---aaaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    |||| ||||||||||||||||||||||  || ||||||   ||||||| ||||||     | ||||||||||||| ||||||||| |||| |||||||||    
T  37770197 aattacttttttgacataaaaaacttcgcaatgacacacgtaaaatacttaaatgcccccaacggtagttaactatcgttgaggatccgatatcagttaa 37770296  T
Q  174 ctaccgctgttcccaacgatagttaactaccg 205  Q
    |||||||||  | ||||| |||||||||||||    
T  37770297 ctaccgctgacctcaacggtagttaactaccg 37770328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 30060 - 29930
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    |||||||||||||||||||||| ||||  || || ||||   |||||| ||||||    |||||||||||||||||||||||||||||| ||  ||||||    
T  30060 aattgcttttttgacataaaaa-cttcacaatgatacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccggcagtagttaa 29962  T
Q  174 ctaccgctgttcccaacgatagttaactaccg 205  Q
    ||||||||  ||| |||| |||||||||||||    
T  29961 ctaccgctagtcctaacggtagttaactaccg 29930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 32402 - 32272
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    |||||||||||||||||||||| ||||  || |||||||   |||||| ||||||     ||||||||||||||||||||||||||||| ||  ||||||    
T  32402 aattgcttttttgacataaaaa-cttcacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggacccggcagtagttaa 32304  T
Q  174 ctaccgctgttcccaacgatagttaactaccg 205  Q
    ||||||||  ||| |||| |||||||||||||    
T  32303 ctaccgctagtcctaacggtagttaactaccg 32272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 18792712 - 18792623
Alignment:
Q  72 ttgataattgcttttttgacataaaaaacttcctaaagacaca---aaaatacataaatgtttttagcggtagttaactaccgttgagga 158  Q
    |||| ||||||||||||||||||||||||||| ||||||||||   ||||||| ||||||| |  ||| ||| |||||||||||| ||||    
T  18792712 ttgacaattgcttttttgacataaaaaacttcataaagacacaagtaaaatacttaaatgtctccagcagtaattaactaccgttcagga 18792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 18665452 - 18665501
Alignment:
Q  220 caattcactttcctcattcttgtgagtttgattcttcacacttggtgttg 269  Q
    |||||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  18665452 caattcactttcttcattcttgtgggtttgattcttcacacttgttgttg 18665501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 27866875 - 27866923
Alignment:
Q  134 agcggtagttaactaccgttgaggacccgacatcagttaactaccgctg 182  Q
    |||||||||||||||||||||| |||||| || ||||||||||||||||    
T  27866875 agcggtagttaactaccgttgaagacccggcagcagttaactaccgctg 27866923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 18791924 - 18792040
Alignment:
Q  69 tttttgataattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgaca 165  Q
    ||||||| ||||| |||||||||||  || |||||||||| ||||||   |||||| |||||    | | | ||||||||||||| |||| |||||||||    
T  18791924 tttttgaaaattgtttttttgacattgaatacttcctaaaaacacaagtaaaatacttaaataccatcaacagtagttaactaccattgaagacccgaca 18792023  T
Q  166 tcagttaactaccgctg 182  Q
     ||||||||||||||||    
T  18792024 gcagttaactaccgctg 18792040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 27543732 - 27543685
Alignment:
Q  135 gcggtagttaactaccgttgaggacccgacatcagttaactaccgctg 182  Q
    ||||||||||||||| |||||||| ||| || ||||||||||||||||    
T  27543732 gcggtagttaactactgttgaggatccggcagcagttaactaccgctg 27543685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 43294199 - 43294279
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacaca---aaaatacataaatgtttttagcggtagttaactaccgttg 154  Q
    ||||| |||||||||||| |||||||| ||||||||||   ||||||| | ||||  | ||||||||||||||||||||||    
T  43294199 aattgtttttttgacatagaaaacttcataaagacacaagtaaaatacgttaatgcctctagcggtagttaactaccgttg 43294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 36759273 - 36759165
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaa---aaatacataaatgtttttagcggtagttaactaccgttgaggacccgacatcagttaa 173  Q
    |||||||||||||||||||||||||||  |  |||||||   |||||| | ||||     ||||||||||||||||||||||||| |||  | | |||||    
T  36759273 aattgcttttttgacataaaaaacttcacattgacacaagtaaaatacctgaatgcccccagcggtagttaactaccgttgaggatccggtagccgttaa 36759174  T
Q  174 ctaccgctg 182  Q
    |||||||||    
T  36759173 ctaccgctg 36759165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 5123755 - 5123824
Alignment:
Q  137 ggtagttaactaccgttgagga-cccgacatcagttaactaccgctgttcccaacgatagttaactaccg 205  Q
    ||||||||||| |||||||||| |||| |  ||||||||||||| || ||| |||| |||||||||||||    
T  5123755 ggtagttaactgccgttgaggaacccgtcggcagttaactaccgttggtccaaacggtagttaactaccg 5123824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 2435329 - 2435290
Alignment:
Q  77 aattgcttttttgacataaaaaacttcctaaagacacaaa 116  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  2435329 aattacttttttgacataaaaaacttcataaagacacaaa 2435290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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