View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_27 (Length: 367)
Name: NF9059_low_27
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_27 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 11560 - 11210
Alignment:
| Q |
1 |
aaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgttattgaatggttatctgcacagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11560 |
aaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgttattgaatggttatctgcacagagt |
11461 |
T |
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| Q |
101 |
tcaacacacacacccatacctacatccttataaacatcccacaaaccatcttttaacatcccatcaactagtgaatcgtgtccaaggcgggatccttttc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11460 |
tcagcacacacacccatacctacatccttataaacatcccacataccatcttttaacatcccatcaactagtgaatcgtgtccaaggcgggatccttttc |
11361 |
T |
|
| Q |
201 |
tgaaattttagcattgaatcagtttattacaacaaaataacgtatcttaagaaaactgtcaaatacactcaatattgaccttgcttctgccaggtactta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11360 |
tgaaattttagcattgaatcagtttattacaacaaaataacttatcttaagaaaactgtcaaatacactcaatattgaccttgcttctgccaggtactta |
11261 |
T |
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| Q |
301 |
ggtacactagacatgttttccataccattggccacaacaacgtcatttatg |
351 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11260 |
ggtacactagacatgttttccataccaccggccacaacaacgtcatttatg |
11210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 43050645 - 43050995
Alignment:
| Q |
1 |
aaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgttattgaatggttatctgcacagagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43050645 |
aaaaatctaatataataatcgtgccgaaacctatttgaacagaaatcaatcccaaaatacctggtcttctcttgttattgaatggttatctgcacagagt |
43050744 |
T |
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| Q |
101 |
tcaacacacacacccatacctacatccttataaacatcccacaaaccatcttttaacatcccatcaactagtgaatcgtgtccaaggcgggatccttttc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43050745 |
tcagcacacacacccatacctacatccttataaacatcccacaaaccatctttcaacatcccatcaactagtgaatcgtgtccaaggcgggatccttttc |
43050844 |
T |
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| Q |
201 |
tgaaattttagcattgaatcagtttattacaacaaaataacgtatcttaagaaaactgtcaaatacactcaatattgaccttgcttctgccaggtactta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43050845 |
tgaaattttagcattgaatcagtttattacaacaaaataactaatcttaagaaaactgtcaaatacactcaatattgaccttgcttctgccaggtactta |
43050944 |
T |
|
| Q |
301 |
ggtacactagacatgttttccataccattggccacaacaacgtcatttatg |
351 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43050945 |
ggtacactagacatgttttccataccaccggccacaacaacgtcatttatg |
43050995 |
T |
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