View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_3 (Length: 736)
Name: NF9059_low_3
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Complemental strand, 20818039 - 20817316
Alignment:
| Q |
1 |
tctccaaaacaaaatcatagagacagagaaatcacgatagcaaactcttagaaaacgacaatgtcacttaaggactacggcgctttgaaaaagaaaacga |
100 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
20818039 |
tctccaaaacaaaatcatagagacaga--aatcaccatagcaaactcttaggaaacgacaatgtcacttaaggactatggcgctttgaaaaagaaaatga |
20817942 |
T |
|
| Q |
101 |
cgacggcttgtgaatggtaaagatgtgaagaggatagtgacactggtatgaggagcacgtcaataatgctacttatcatgaagattctgaagaaggttta |
200 |
Q |
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| T |
20817941 |
ctacggcttgttaatggtaaagatgtgaagaggatca-gacactggtatgaggagcacgtcgatgatgctacttatcatgaagattctgcagaaggttta |
20817843 |
T |
|
| Q |
201 |
agaaacgattgtaaatttcaataaatagcaaaatgcattcaattttcgacattctggatatccgagtatcaagcaattgtgaaagaaaaatcaacctata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817842 |
agaaacgattgtaaatttcaataaatagcaaaatgcattcaattttcgtcatactggatatccgagtatcaagcaattgtgaaagaaaaatcaacctata |
20817743 |
T |
|
| Q |
301 |
aaattgatgctattaatatgattgaaattattaaattaaatgctgttctataaattgagatacagtacatgaaagagaaataattgtgtgataaaagtca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817742 |
aaattgatgctattaatatgattgaaattattaaattaaatgctgttctataaattgagatacagtacatgaaagagaaataattgtgtgataaaagtca |
20817643 |
T |
|
| Q |
401 |
tatcaggttttgtgggcaatttg---nnnnnnnncgcgtccagaaattaaggcacacgcgtccagaaattaaggcagcacagaggatctcaaattcatac |
497 |
Q |
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| T |
20817642 |
tatcaggttttgtaggcaatttgaaaaaaaaaaacgcgtccagaaattaaggcacacgcgtccagaaattaaggcagcacagaggatctcaaattcatac |
20817543 |
T |
|
| Q |
498 |
tatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgt |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817542 |
tatgcaattaagaaataaaaccctgaagtggtgctatagatcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgt |
20817443 |
T |
|
| Q |
598 |
atgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctt |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20817442 |
atgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctt |
20817343 |
T |
|
| Q |
698 |
taactgtcaagtagcgtcctctctgct |
724 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
20817342 |
taactgtcaagtagcgtcctctctgct |
20817316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 7e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 537 - 717
Target Start/End: Original strand, 33387604 - 33387784
Alignment:
| Q |
537 |
atcatggtaatgtggtgctatatcaactaaccattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagata |
636 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
33387604 |
atcatagtaatttggtgctatatcaactaaccagtcaccacgtatatctgtcacagtacgtatgaaattgtcactcgtaaaaacatattcattatagata |
33387703 |
T |
|
| Q |
637 |
acccattcaggcttgtggtccaggcaatttgatggatgcaagtatacttcctgcttgtctttaactgtcaagtagcgtcct |
717 |
Q |
| |
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||||| || |||||| ||||||||||||||||||||||||| | ||| ||| || ||||| |||||||||||| ||||| |
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| T |
33387704 |
acccactcgggcttggggtccaggcaatttgatggatgcaattgtaccatctggttatctttcactgtcaagtagtgtcct |
33387784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 566 - 679
Target Start/End: Original strand, 38778045 - 38778158
Alignment:
| Q |
566 |
accattcaccacgtatatccatcacagtacgtatgaaatgacgactcgtaagaacatattcattatagataacccattcaggcttgtggtccaggcaatt |
665 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |
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| T |
38778045 |
accattcaccacgaatatctgtcacagtacgtatgaaattccgactcgtaagaacatattcattgtagataacccactcgggcttgtggtccagacaatt |
38778144 |
T |
|
| Q |
666 |
tgatggatgcaagt |
679 |
Q |
| |
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|||||||||||||| |
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| T |
38778145 |
tgatggatgcaagt |
38778158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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