View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_31 (Length: 333)
Name: NF9059_low_31
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 317
Target Start/End: Original strand, 53494469 - 53494781
Alignment:
| Q |
14 |
cacaatcatcccttcaactcaacatttcatctccactacgaattactacccacctatacatacatacaccacca---------tggcatacactcataat |
104 |
Q |
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| T |
53494469 |
cacaatcatcccttcaattcaacatttcatctccactacgaattactacccacctatatatacatacaccaccaaatcaaccatggcatacactcataat |
53494568 |
T |
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| Q |
105 |
tgctcaatgatcactgtcctcttatctctattggtttttgccactttcatgactacatatgcagcaggaaacttctaccagaactttgatataacatggg |
204 |
Q |
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| T |
53494569 |
tgctcaatgatcactgtcctcttatctctattggtttttgccactttcatgactacatatgcagctggaaacttttaccagaactttgatataacatggg |
53494668 |
T |
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| Q |
205 |
gagatggtcgtgctaagatactcgacaacggtcaacttctcactctttccctcgacaaagcctctggttctggattccaatccaagaatgaatatctctt |
304 |
Q |
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| T |
53494669 |
gagatggtcgtgccaagatactcgacaacggacaacttctcactttatcccttgacaaagcctctggttctggatttcaatccaagaatgaatatctctt |
53494768 |
T |
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| Q |
305 |
tggcaacattgat |
317 |
Q |
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| T |
53494769 |
tggcaacattgat |
53494781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 317
Target Start/End: Original strand, 53492323 - 53492453
Alignment:
| Q |
187 |
actttgatataacatggggagatggtcgtgctaagatactcgacaacggtcaacttctcactctttccctcgacaaagcctctggttctggattccaatc |
286 |
Q |
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| T |
53492323 |
actttgatataacatggggggatggtcgtgctaaaatactcaacagtggccaacttcttactctatctcttgataagtcctctggttcaggctttcaatc |
53492422 |
T |
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| Q |
287 |
caagaatgaatatctctttggcaacattgat |
317 |
Q |
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| T |
53492423 |
caaaaatgaatacctttttggcaaaattgat |
53492453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 305
Target Start/End: Original strand, 53501759 - 53501877
Alignment:
| Q |
187 |
actttgatataacatggggagatggtcgtgctaagatactcgacaacggtcaacttctcactctttccctcgacaaagcctctggttctggattccaatc |
286 |
Q |
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| T |
53501759 |
actttgatataacatggggagatggccgagcgaagatactaaacaatggtgagttactcactctatcacttgacaaagcatctggttcaggattccaatc |
53501858 |
T |
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| Q |
287 |
caagaatgaatatctcttt |
305 |
Q |
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|||||||| ||||||||| |
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| T |
53501859 |
aaagaatgagtatctcttt |
53501877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 317
Target Start/End: Original strand, 53498648 - 53498767
Alignment:
| Q |
198 |
acatggggagatggtcgtgctaagatactcgacaacggtcaacttctcactctttccctcgacaaagcctctggttctggattccaatccaagaatgaat |
297 |
Q |
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| T |
53498648 |
acatggggagatggtcgtgccaaaatactcaacaacgccaatcttcttactctatctcttgacaaagcctctggttcaggctttcaatccaaaaatgaat |
53498747 |
T |
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| Q |
298 |
atctctttggcaacattgat |
317 |
Q |
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| | |||||||| |||||| |
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| T |
53498748 |
acttatttggcaaaattgat |
53498767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 52590385 - 52590478
Alignment:
| Q |
187 |
actttgatataacatggggagatggtcgtgctaagatactcgacaacggtcaacttctcactctttccctcgacaaagcctctggttctggatt |
280 |
Q |
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| T |
52590385 |
actttgatataacatggggtgatggtcgtggcaaaatcctcaacaacggacaacttcttactttgtctttggacaaagcatctggctctggatt |
52590478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 317
Target Start/End: Original strand, 37188285 - 37188415
Alignment:
| Q |
187 |
actttgatataacatggggagatggtcgtgctaagatactcgacaacggtcaacttctcactctttccctcgacaaagcctctggttctggattccaatc |
286 |
Q |
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||||||||||||||||||| ||||| |||||||| |||||| |||| || |||||||| ||| | || || |||||| ||||||| ||||| || ||||| |
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| T |
37188285 |
actttgatataacatggggggatggacgtgctaaaatactcaacaatggccaacttcttactttgtctcttgacaaatcctctggctctggttttcaatc |
37188384 |
T |
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| Q |
287 |
caagaatgaatatctctttggcaacattgat |
317 |
Q |
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||| |||||||| || |||||||| |||||| |
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| T |
37188385 |
caaaaatgaatacctttttggcaaaattgat |
37188415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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