View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_42 (Length: 238)
Name: NF9059_low_42
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_42 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 29605533 - 29605753
Alignment:
| Q |
18 |
ctagcctcaatcaatgctcaatcacatgcagctgcaccatccaatttgccatttacaacttcaccgtttgtagcgaaacaacaacctgttgtggcagcaa |
117 |
Q |
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| T |
29605533 |
ctagcctcaatcaatgctcaatcacatgcagctgcaccatccaatttgccaattacaacttcaccgtttgtagcgaaacaacaacctgttgtggcagcaa |
29605632 |
T |
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| Q |
118 |
tttctcctacttctaacaaacccacagccacggtcacggcagctgcaccatcgaaggtgccaaccacaaatccatcggcaccttccacactgccattata |
217 |
Q |
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| T |
29605633 |
tttctcctacttctaacaaacccacagccacggtcacggcagctgcaccatcgaagttgccaaccacaaatccatcggaaccatcaacactgccattata |
29605732 |
T |
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| Q |
218 |
caaacaacagcctattgtggc |
238 |
Q |
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| T |
29605733 |
caaacaacagcctattgtggc |
29605753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 29605833 - 29605957
Alignment:
| Q |
111 |
gcagcaatttctcctacttctaacaaacccacagccacggtcacggcagctgcaccatcgaaggtgccaaccacaaatccatcggcaccttccacactgc |
210 |
Q |
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||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||| || |||||||| |||||||||||| ||| |
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| T |
29605833 |
gcagcaacttctcctacttctaacaaacccataaccacagtcacggcagctgcaccatcgaagttgccaacaacgaatccatctgcaccttccacattgc |
29605932 |
T |
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| Q |
211 |
cattatacaaacaacagcctattgt |
235 |
Q |
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| T |
29605933 |
ccctagacaaacaaaagcctattgt |
29605957 |
T |
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