View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9059_low_47 (Length: 224)

Name: NF9059_low_47
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9059_low_47
NF9059_low_47
[»] chr4 (3 HSPs)
chr4 (18-169)||(53465286-53465437)
chr4 (82-151)||(687098-687167)
chr4 (82-151)||(704465-704534)
[»] chr2 (1 HSPs)
chr2 (84-166)||(45217885-45217967)
[»] chr1 (1 HSPs)
chr1 (84-145)||(2867145-2867206)
[»] chr5 (1 HSPs)
chr5 (90-154)||(33032576-33032640)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 53465437 - 53465286
Alignment:
Q  18 tcagcataagaagattgcatggctgaactcatctccctactcttctttgcaagtgtcctttcaagcttgtgagcattttggtgtcctcccaaagcttgag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53465437 tcagcataagaagattgcatggctgaactcatctccctactcttctttgcaagtgtcctttcaagcttgtgagcattttggtgtcctcccaaagcttgag 53465338  T
Q  118 agctataaaactttctttgacaatagttgcatgagaatatcctttgctccat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53465337 agctataaaactttctttgacaatagttgcatgagaatatcctttgctccat 53465286  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 687098 - 687167
Alignment:
Q  82 gcttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatga 151  Q
    ||||||| ||||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  687098 gcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatga 687167  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 704465 - 704534
Alignment:
Q  82 gcttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatga 151  Q
    ||||||| ||||||||||||||||| |  |||||||| ||||||||||||||||| || |||||||||||    
T  704465 gcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatga 704534  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 45217885 - 45217967
Alignment:
Q  84 ttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatgagaatatcctttgctc 166  Q
    ||||| |||||||||||||| || |  || || || ||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  45217885 ttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaatccttggctc 45217967  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 2867145 - 2867206
Alignment:
Q  84 ttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagtt 145  Q
    |||||||||||||||||||| || || ||||| |||||||| || ||||| |||||||||||    
T  2867145 ttgtgagcattttggtgtccacctaatgcttgtgagctatagaattttctatgacaatagtt 2867206  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 33032576 - 33032640
Alignment:
Q  90 gcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatgagaa 154  Q
    |||||||||||||| || | ||||||||| ||  |||||||||| ||||| || |||||||||||    
T  33032576 gcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaa 33032640  T

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