View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9059_low_48 (Length: 218)
Name: NF9059_low_48
Description: NF9059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9059_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 3344240 - 3344415
Alignment:
| Q |
18 |
atgaatatgttagttattttcgtaaacacatatatatcatnnnnnnntctaataagatggaaacaaattactcgaaacacaatttatgaatgtgt--gtg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3344240 |
atgaatatgttagttattttcgtaaacacatatatatcataaaaaaatctaataagatggaaacaaattactcgaaacacaatttatgaatgtgtacgtg |
3344339 |
T |
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| Q |
116 |
caaaagagagat---------agccacgtatcaccgaaatttcaaatgaatgcgtgttcaatgtatgccatgtgtc |
182 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3344340 |
caaaagagagatatagaaaacaggcacgtatcaccgaaatttcaaatgaatgcgtgttcaatgcatgccatgtgtc |
3344415 |
T |
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