View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_high_19 (Length: 253)
Name: NF9060_high_19
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 6960174 - 6960389
Alignment:
| Q |
18 |
gacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttcttggatccttcagcagcaaagacagtgtttcaatcagaagtta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6960174 |
gacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttcttggatcctttagcagcaaagacagtgtttcaatcagaagtta |
6960273 |
T |
|
| Q |
118 |
acatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagtatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6960274 |
acatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagtgtt |
6960373 |
T |
|
| Q |
218 |
ttccaagcgtcttctg |
233 |
Q |
| |
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|||||||||||||||| |
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|
| T |
6960374 |
ttccaagcgtcttctg |
6960389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 6967604 - 6967819
Alignment:
| Q |
18 |
gacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttcttggatccttcagcagcaaagacagtgtttcaatcagaagtta |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||||| |
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| T |
6967604 |
gacaaaggaaatgtcttttctgttccttccaacaagtatgcagaattcaatatgttcttggatcctttggcagcaaaggcggtgtttcaatcggaagtta |
6967703 |
T |
|
| Q |
118 |
acatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagtatt |
217 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||| |||| || |
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| T |
6967704 |
acatcacattcattccactcagtatccagcaaaaagcaagttcattttcaagtactttaagatggctcagtcaaatagaaaaaacaccagaaacagtgtt |
6967803 |
T |
|
| Q |
218 |
ttccaagcgtcttctg |
233 |
Q |
| |
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|||||| ||| ||||| |
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| T |
6967804 |
ttccaaacgtattctg |
6967819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 181119 - 180924
Alignment:
| Q |
18 |
gacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttcttggatccttcagcagcaaagacagtgtttcaatcagaagtta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| |
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| T |
181119 |
gacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttct---atcctttagcaacaaagacattgtttcaatcagaagtta |
181023 |
T |
|
| Q |
118 |
acatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagtat |
216 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| |
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| T |
181022 |
acatcacactcgttccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggctcagtagaacagaaaaaactccagaagcagtat |
180924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 21744908 - 21745009
Alignment:
| Q |
115 |
ttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagt |
214 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
21744908 |
ttaacatcccactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
21745007 |
T |
|
| Q |
215 |
at |
216 |
Q |
| |
|
|| |
|
|
| T |
21745008 |
at |
21745009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 42740762 - 42740863
Alignment:
| Q |
115 |
ttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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|
| T |
42740762 |
ttaacatcacactcattccactcggtatccagcataaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
42740861 |
T |
|
| Q |
215 |
at |
216 |
Q |
| |
|
|| |
|
|
| T |
42740862 |
at |
42740863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 49100721 - 49100604
Alignment:
| Q |
17 |
agacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttcttggatccttcagcagcaaagacagtgtttcaatcagaagtt |
116 |
Q |
| |
|
||||||||||||||| ||||| || ||||| ||| | |||||||||||||| |||||| | ||||||| ||| || || ||||||||| ||||||||||| |
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| T |
49100721 |
agacaaaggaaatgttttttcagtcccttcaaaccaatatgcagaattcaacatgttcctagatcctttagcggccaaaacagtgtttgaatcagaagtt |
49100622 |
T |
|
| Q |
117 |
aacatcacactcattcca |
134 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
49100621 |
aacatcacactcattcca |
49100604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 49112515 - 49112398
Alignment:
| Q |
17 |
agacaaaggaaatgtattttctgttccttccaacaagtatgcagaattcaatatgttcttggatccttcagcagcaaagacagtgtttcaatcagaagtt |
116 |
Q |
| |
|
||||||||||||||| ||||| |||||||| ||| | |||||||||||||| |||||| | ||||||| ||| || || |||||||| ||||||||||| |
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|
| T |
49112515 |
agacaaaggaaatgtgttttcagttccttctaaccaatatgcagaattcaacatgttcctagatcctttagccgccaaaacagtgttcgaatcagaagtt |
49112416 |
T |
|
| Q |
117 |
aacatcacactcattcca |
134 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
49112415 |
aagatcacactcattcca |
49112398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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