View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_high_3 (Length: 683)
Name: NF9060_high_3
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Complemental strand, 41821334 - 41820781
Alignment:
| Q |
1 |
ctaggtgggttgtgaactgcctaatcagaccattcaaaggtcaaccaaagctagtttcggagctatttttgggcataagtgaaccactagccatccnnnn |
100 |
Q |
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| T |
41821334 |
ctaggtgggttgtgaactgcctaatcagaccattcaaaggtcaaccaaagctagtttcggagctatttctgggcataagtgaaccactagccatccaaaa |
41821235 |
T |
|
| Q |
101 |
nnnnnntcatagagggtaccccnnnnnnnntcaaggattgcattgaagcaagcataaccaagctcttagattatggtttgttgatttgtggttggtaaag |
200 |
Q |
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| T |
41821234 |
aaaa--tcatagagggtaccc-taaaaaaatcaaggattgcattgaagcaagcataaccaagctcttagattatggattgttgatttgtggttggtaaag |
41821138 |
T |
|
| Q |
201 |
aatcgttgaggaaacactaaaacatttgaagatgcatgacatgatatgcttgtggatatcaaagaaattcaagaaaaatcatnnnnnnntttatgaagat |
300 |
Q |
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| T |
41821137 |
aatcgttgaggaaacactaaaacatttgaagatgcatgacatgatatgcttgtggatatcaaagaaattcaagaaaaatcataaaaaaatttatgaaaat |
41821038 |
T |
|
| Q |
301 |
gttgaccaaagacccatcatcctgagtgagaaagatattataaaggattgttttgggataacctcgttctaccacaatggttatgcaaacaaagataatt |
400 |
Q |
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| T |
41821037 |
gttgaccaaaaacccatcatcctgagtgagaaagatattataaaggattgttttggggtaacctcgttctactacaatggttatgcaaacaaagattatt |
41820938 |
T |
|
| Q |
401 |
atctttctcaattgtatattccaaaccttcagattttagtgttaaaaggtgacttcaaattataataatttttatcatttgaaggaataaaaggactcaa |
500 |
Q |
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| T |
41820937 |
atctttttcaattgtatattccaaaccttcagattttagtgttaaaaggtgacttcaaattataataatttttatcatttgaaggaataaaaggactcaa |
41820838 |
T |
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| Q |
501 |
ggtgttaaagcttaaccatttttggaatcacgagataccattagctatgagatctta |
557 |
Q |
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| T |
41820837 |
ggtgttaaagcttaaccatttttggaatcacgagataccattagctatgagatctta |
41820781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 618 - 666
Target Start/End: Complemental strand, 41820720 - 41820672
Alignment:
| Q |
618 |
agtaaatgtaaaccaacttatcttgtttgcccactctctaattaatctt |
666 |
Q |
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| T |
41820720 |
agtaaatgtaaaccaacttatcttgtttgcccactctctaattaatctt |
41820672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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