View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9060_high_6 (Length: 532)
Name: NF9060_high_6
Description: NF9060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9060_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Original strand, 8673181 - 8673652
Alignment:
| Q |
17 |
acctttttaccaatgaatggtgcagcagctattccaacgggaaggatatgttaaatgtatatttttaacatagatgctgaggaagactctactgagaaaa |
116 |
Q |
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| T |
8673181 |
acctttttaccaatgaatggtgcagcaaatattccaacgggaaggatatgttaaatgtatatttttaacatagatgctgagggagactctactgagaaaa |
8673280 |
T |
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| Q |
117 |
tcatgagcatgattgaagaatctgagaaatacaaggatgaagatgaaaagtactagaaaaaagttaaagcagtgaatgctctggattattttgtttacaa |
216 |
Q |
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| T |
8673281 |
tcatgagcatgattgaagaatctgagaaatacaaggatgaagatgaaaagtactagaaaaaagttaaagcagtgaatgctctggattattttgtttacaa |
8673380 |
T |
|
| Q |
217 |
gttaaacaaggctttggagggtagtggttcttagcttcacaaacaagatgaattaaagatcaattttgcagtttcaaaggccaaaattttactttatccg |
316 |
Q |
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| T |
8673381 |
gttaaacaaggctttggagggtattggttcttagcttcccaaacaagatgaattaaagatcaattttgcagtttcaaaggccaaaattttactttatcgg |
8673480 |
T |
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| Q |
317 |
agccaacaaaataagaaagaggtgttcaagaaccgtttggataattagatgaagagtatcgtaatcgtaaaagccaatatccagattgatttgctagtaa |
416 |
Q |
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| T |
8673481 |
agccaacaaaataagaaagaggtgttcaagaaccgtttggataattagatgaagagtaccgtaatcgtaaaag-caatatccagattgatttactagtaa |
8673579 |
T |
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| Q |
417 |
ttttcgaatttaggcatgtgaaatttgaaataattatgaaccatattatctaaatatagtttaatgttagttt |
489 |
Q |
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| T |
8673580 |
ttttcgaatttaggcatgtgaaatttgaaataattatgaaccatattatctaaatatagtttaatgttagttt |
8673652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 117 - 360
Target Start/End: Complemental strand, 8664809 - 8664566
Alignment:
| Q |
117 |
tcatgagcatgattgaagaatctgagaaatacaaggatgaagatgaaaagtactagaaaaaagttaaagcagtgaatgctctggattattttgtttacaa |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8664809 |
tcataagcatgattgaagaatctgagaaatacaaggctgaagacgaaaagtactagaaaaaagttaaagcagtgaatgctctggattattttgtttacaa |
8664710 |
T |
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| Q |
217 |
gttaaacaaggctttggagggtagtggttcttagcttcacaaacaagatgaattaaagatcaattttgcagtttcaaaggccaaaattttactttatccg |
316 |
Q |
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| T |
8664709 |
gttaaacaaggctttggagggtattggttcttagcttcacaaacaagatgaattaaagatcaattttgcagtttcaaatgccaaaattctactttattct |
8664610 |
T |
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| Q |
317 |
agccaacaaaataagaaagaggtgttcaagaaccgtttggataa |
360 |
Q |
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| T |
8664609 |
agccaacaaaataagaaagaggtgttcaaggactgtttggataa |
8664566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 8637278 - 8637370
Alignment:
| Q |
140 |
gagaaatacaaggatgaagatgaaaagtactagaaaaaagttaaagcagtgaatgctctggattattttgtttacaagttaaacaaggctttg |
232 |
Q |
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| T |
8637278 |
gagaagtacaaggccgaagatgaagagtaccagaagaaagttaatgcagtgaatgctttggatgattatgtttacaagataaacaaggctttg |
8637370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 489
Target Start/End: Complemental strand, 8664522 - 8664466
Alignment:
| Q |
433 |
tgtgaaatttgaaataattatgaaccatattatctaaatatagtttaatgttagttt |
489 |
Q |
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| T |
8664522 |
tgtgaattttgaaataattatgaaccatactatctaaatatagtttaatgtttgttt |
8664466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 489
Target Start/End: Original strand, 8637571 - 8637626
Alignment:
| Q |
433 |
tgtgaaatttgaaataattatgaaccatattatctaaatatagtttaatgttagttt |
489 |
Q |
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| T |
8637571 |
tgtgaaatttgcaaaaattatgaaacatattatct-aatatagtttaatgttagttt |
8637626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 517
Target Start/End: Original strand, 8673669 - 8673698
Alignment:
| Q |
488 |
ttgatccttgcactcagttttatatctctg |
517 |
Q |
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| T |
8673669 |
ttgatccttgcactcagttttatatctctg |
8673698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 9337785 - 9337874
Alignment:
| Q |
384 |
taaaagccaatatccagattgatttgctagtaattttcgaatttaggcatgtgaaatttgaaataattatgaaccatattatctaaatat |
473 |
Q |
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| T |
9337785 |
taaaagccaatatccagattgatttactggtaattttcgaatttatgagtgtgaaatttgaaataattatgaatcatattatctaaatat |
9337874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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